Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_H10
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical pr... 29 3.8
U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter... 29 3.8
M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.ele... 29 3.8
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 28 5.0
U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protei... 28 5.0
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 5.0
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 5.0
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 5.0
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 28 6.7
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 28 6.7
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 28 6.7
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 28 6.7
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 28 6.7
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 27 8.8
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 27 8.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 27 8.8
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 27 8.8
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 27 8.8
AL009246-5|CAA15839.1| 357|Caenorhabditis elegans Hypothetical ... 27 8.8
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/57 (33%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Frame = -2
Query: 497 PPPKXGGGXXPXXPXFP---PXXXKXGGGXKKKXXFLGFSPPTPGEXGXNFFFPXPP 336
PPP GG P P F P GG G PP P G P PP
Sbjct: 75 PPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPSGLG-VAPQPP 130
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 306 PGGXGTPXXFXGAGEKKIXPXFPXXGGG 389
PG G P GAGEK I P + GG
Sbjct: 267 PGAPGQPGQAGGAGEKGICPKYCAIDGG 294
>Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.6 protein.
Length = 304
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 306 PGGXGTPXXFXGAGEKKIXPXFPXXGGG 389
PG G P GAGEK I P + GG
Sbjct: 267 PGAPGQPGQSGGAGEKGICPKYCAIDGG 294
>Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.5 protein.
Length = 304
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 306 PGGXGTPXXFXGAGEKKIXPXFPXXGGG 389
PG G P GAGEK I P + GG
Sbjct: 267 PGAPGQPGQSGGAGEKGICPKYCAIDGG 294
>Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.1 protein.
Length = 304
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 306 PGGXGTPXXFXGAGEKKIXPXFPXXGGG 389
PG G P GAGEK I P + GG
Sbjct: 267 PGAPGQPGQSGGAGEKGICPKYCAIDGG 294
>U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 13 protein.
Length = 302
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = +2
Query: 302 GPXGXGNPXXFXGGXGKKNXPXFPXXWGGKTPKXXXFFLXPPPXXP 439
GP G G GK P FP GK P+ + PPP P
Sbjct: 106 GPQGAPGAPGKPGRPGKPGAPGFPGN-PGKAPQKPCEEITPPPCKP 150
>M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein (
C.elegans collagen (dpy-13) gene, complete cds. ).
Length = 302
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = +2
Query: 302 GPXGXGNPXXFXGGXGKKNXPXFPXXWGGKTPKXXXFFLXPPPXXP 439
GP G G GK P FP GK P+ + PPP P
Sbjct: 106 GPQGAPGAPGKPGRPGKPGAPGFPGN-PGKAPQKPCEEITPPPCKP 150
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 28.3 bits (60), Expect = 5.0
Identities = 23/75 (30%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
Frame = -3
Query: 523 PXGGXXKKPPPXXXGGXF--XPXXXXFPXXGXXGGGXQKKXXXFWGFPPPXXGKXGXIFF 350
P GG K PP GG P P GG Q + G P G G +
Sbjct: 151 PAGGPGPKGPPGPPGGHGEPGPAGRGGPRGPPGPGGPQGEAGEDGGAGNP--GTPGQVRS 208
Query: 349 SPAPXKXXGVPXPPG 305
P+P G P PG
Sbjct: 209 LPSPPGEPGQPGEPG 223
>U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protein
139 protein.
Length = 310
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 264 GRKKNXGLXVXKPXPGGXGTPXXFXGAGEKKIXPXFPXXGGG 389
G++ + G PG G P G+GEK I P + GG
Sbjct: 258 GQRGSDGQPGNDGQPGAPGQPGQSGGSGEKGICPKYCAIDGG 299
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 5.0
Identities = 23/74 (31%), Positives = 23/74 (31%), Gaps = 8/74 (10%)
Frame = +2
Query: 347 GKKNXPXFPXXWGGKTPKXXXFFLXP-----PPXXPXXGEXXXXGXKXPPPXXGGGF--- 502
G P P GG P L P PP P G G PPP GG
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
Query: 503 FXXXXPGGXXXXPP 544
PGG PP
Sbjct: 772 PPPPPPGGFKGGPP 785
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 5.0
Identities = 23/74 (31%), Positives = 23/74 (31%), Gaps = 8/74 (10%)
Frame = +2
Query: 347 GKKNXPXFPXXWGGKTPKXXXFFLXP-----PPXXPXXGEXXXXGXKXPPPXXGGGF--- 502
G P P GG P L P PP P G G PPP GG
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 771
Query: 503 FXXXXPGGXXXXPP 544
PGG PP
Sbjct: 772 PPPPPPGGFKGGPP 785
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 5.0
Identities = 23/74 (31%), Positives = 23/74 (31%), Gaps = 8/74 (10%)
Frame = +2
Query: 347 GKKNXPXFPXXWGGKTPKXXXFFLXP-----PPXXPXXGEXXXXGXKXPPPXXGGGF--- 502
G P P GG P L P PP P G G PPP GG
Sbjct: 295 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP 354
Query: 503 FXXXXPGGXXXXPP 544
PGG PP
Sbjct: 355 PPPPPPGGFKGGPP 368
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/65 (29%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Frame = +2
Query: 302 GPXGXGNPXXFXGGXGKKNXPXFPXXWGGKTPKXXXFFLXPPPXXP-XXGEXXXXGXKXP 478
GP G G GK P P G+ P+ + PPP P G G P
Sbjct: 103 GPPGPAGTPGKPGRPGKPGAPGLPGN-PGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGP 161
Query: 479 PPXXG 493
P G
Sbjct: 162 PGDSG 166
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +1
Query: 382 GGENPKXXXFFFXPPPXXXXXGGKXGFXGKXPPPXXGG 495
GG +P+ PP GG G G+ PP GG
Sbjct: 160 GGGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGG 197
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +1
Query: 382 GGENPKXXXFFFXPPPXXXXXGGKXGFXGKXPPPXXGG 495
GG +P+ PP GG G G+ PP GG
Sbjct: 440 GGGDPRGPPGGMGGPPGHGGMGGPPGHGGQGGPPGHGG 477
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/65 (29%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Frame = +2
Query: 302 GPXGXGNPXXFXGGXGKKNXPXFPXXWGGKTPKXXXFFLXPPPXXP-XXGEXXXXGXKXP 478
GP G G GK P P G+ P+ + PPP P G G P
Sbjct: 103 GPPGPAGTPGKPGRPGKPGAPGLPGN-PGRPPQQPCEPITPPPWKPCPQGPPGPPGPPGP 161
Query: 479 PPXXG 493
P G
Sbjct: 162 PGDSG 166
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/65 (29%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Frame = +2
Query: 302 GPXGXGNPXXFXGGXGKKNXPXFPXXWGGKTPKXXXFFLXPPPXXP-XXGEXXXXGXKXP 478
GP G G GK P P G+ P+ + PPP P G G P
Sbjct: 103 GPPGPAGTPGKPGRPGKPGAPGLPGN-PGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGP 161
Query: 479 PPXXG 493
P G
Sbjct: 162 PGDSG 166
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 306 PGGXGTPXXFXGAGEKKIXPXFPXXGGG 389
PGG GT G GEK I P + GG
Sbjct: 264 PGGPGTAGKPGGEGEKGICPKYCAIDGG 291
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/61 (31%), Positives = 21/61 (34%)
Frame = +2
Query: 362 PXFPXXWGGKTPKXXXFFLXPPPXXPXXGEXXXXGXKXPPPXXGGGFFXXXXPGGXXXXP 541
P P G+TP PPP P G PPP G + PGG P
Sbjct: 297 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRY-----PGGMPPPP 351
Query: 542 P 544
P
Sbjct: 352 P 352
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 306 PGGXGTPXXFXGAGEKKIXPXFPXXGGG 389
PGG GT G GEK I P + GG
Sbjct: 264 PGGPGTAGKPGGEGEKGICPKYCAIDGG 291
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/61 (31%), Positives = 21/61 (34%)
Frame = +2
Query: 362 PXFPXXWGGKTPKXXXFFLXPPPXXPXXGEXXXXGXKXPPPXXGGGFFXXXXPGGXXXXP 541
P P G+TP PPP P G PPP G + PGG P
Sbjct: 307 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRY-----PGGMPPPP 361
Query: 542 P 544
P
Sbjct: 362 P 362
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 306 PGGXGTPXXFXGAGEKKIXPXFPXXGGG 389
PGG GT G GEK I P + GG
Sbjct: 264 PGGPGTAGKPGGEGEKGICPKYCAIDGG 291
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 306 PGGXGTPXXFXGAGEKKIXPXFPXXGGG 389
PGG GT G GEK I P + GG
Sbjct: 264 PGGPGTAGKPGGEGEKGICPKYCAIDGG 291
>AL009246-5|CAA15839.1| 357|Caenorhabditis elegans Hypothetical
protein C47F8.6 protein.
Length = 357
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 30 ILLTSAEYLCSTPVLSGSTPQXPCXGGGWXGGNXXPSS 143
+ L S+E + +L+ P+ C GW GG+ P +
Sbjct: 21 LCLKSSEKVEEPSLLADEAPKQNCTKNGWLGGSTAPET 58
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,621,317
Number of Sequences: 27780
Number of extensions: 261082
Number of successful extensions: 675
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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