Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_H10
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.4  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 60  CINTLHWLIILHES 19
           C N ++W+I LH S
Sbjct: 418 CFNLMYWIIYLHIS 431


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 60  CINTLHWLIILHES 19
           C N ++W+I LH S
Sbjct: 418 CFNLMYWIIYLHIS 431


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = -3

Query: 163 KMXAQVQDDGXXLPPXQ---PPPXQGXCGVDPLKTGVLHK 53
           K  A+ + +G   P  +   P P    C ++ LK+G ++K
Sbjct: 12  KRSAESEFEGASSPKKRNKNPQPKNAVCALNELKSGAVYK 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,910
Number of Sequences: 438
Number of extensions: 4489
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)