Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_G16
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    68   1e-12
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    65   9e-12
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        29   0.74 
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    27   2.2  
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    27   3.0  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 39/80 (48%), Positives = 46/80 (57%)
 Frame = -1

Query: 578 IXEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHXIGXXXXXXXXXXXXXXXXLPRDQ 399
           I EAS+VNIPVIALC+TDS L  VDIAIP N K    IG                L R  
Sbjct: 136 IKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSA 195

Query: 398 RWDVVVDLFFYP*PLKKVKR 339
            WDV+ DL+FY  P ++V+R
Sbjct: 196 PWDVMPDLYFYRDP-EEVER 214


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 65.3 bits (152), Expect = 9e-12
 Identities = 34/74 (45%), Positives = 41/74 (55%)
 Frame = -1

Query: 578 IXEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHXIGXXXXXXXXXXXXXXXXLPRDQ 399
           I EAS+VNIPVIALC+TDS L  VD+AIP N K    IG                + R  
Sbjct: 137 IKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTT 196

Query: 398 RWDVVVDLFFYP*P 357
            W+V+ DL+FY  P
Sbjct: 197 AWEVMPDLYFYRDP 210


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 351 LQGSRVEEQINHNIPALVTGKHTTKPQHFTCQQPXHQTNXVG-RLGVAW 494
           L G+RV +QI   +P     KH  +   F  Q+     N VG   GVAW
Sbjct: 187 LNGTRVTDQILQLVPNRAVFKHALRAIKFWAQRRAIYANVVGFPGGVAW 235


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 545 IALCNTDSPLRFVDIAIPCNTKSSHXI 465
           + LC+ +S  RF D+A+  NTK +H I
Sbjct: 85  LQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 572 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKS 477
           EA   ++P I + +TD+  R V   IP N  S
Sbjct: 197 EAQKTHVPTIGIIDTDADPRMVTYPIPANDDS 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,607
Number of Sequences: 5004
Number of extensions: 43526
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)