Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_G16
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...    69   4e-12
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...    69   5e-12
10_02_0108 - 5361431-5362405                                           30   1.8  
01_06_0867 - 32586254-32586574,32586756-32587172                       30   2.4  
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.1  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   7.2  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 34/86 (39%), Positives = 46/86 (53%)
 Frame = -1

Query: 581 PIXEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHXIGXXXXXXXXXXXXXXXXLPRD 402
           PI E++  NIP IA C+TDSP+R+VDI IP N K  + IG                +   
Sbjct: 137 PIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPG 196

Query: 401 QRWDVVVDLFFYP*PLKKVKRMNNKP 324
            +WDV+VDLFFY  P +  ++    P
Sbjct: 197 HKWDVMVDLFFYRDPEEAKEQEEEAP 222


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 33/75 (44%), Positives = 41/75 (54%)
 Frame = -1

Query: 581 PIXEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHXIGXXXXXXXXXXXXXXXXLPRD 402
           PI E++  NIP IA C+TDSP+R+VDI IP N K    IG                +   
Sbjct: 137 PIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPG 196

Query: 401 QRWDVVVDLFFYP*P 357
            +WDV+VDLFFY  P
Sbjct: 197 HKWDVMVDLFFYRDP 211


>10_02_0108 - 5361431-5362405
          Length = 324

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 376 KSTTTSQRWSR-GSTPRSLSTSRANNRHIKPIXWEDLVLHGIAMSTNLNGESV 531
           ++ T  +RW R  S+P  L   R  +RH  P+    +  +G A+S  + GE V
Sbjct: 27  RAATVCRRWRRVASSPTFLRLFRRLHRHAPPLLGFFVCNNGFAVSRKVGGELV 79


>01_06_0867 - 32586254-32586574,32586756-32587172
          Length = 245

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +3

Query: 336 HPFHFLQG--SRVEEQINHNIPALVTGKHTTKPQHFTCQQPXHQ-TNXVGRLGVAWDSNV 506
           H    LQG  S +E Q+ +   AL +    T PQHF   QP H   + + ++ V +D   
Sbjct: 138 HQVSLLQGQLSVLESQLFNLRVALASAHPDTPPQHFVVLQPAHSAASTLNQVVVNYDDLP 197

Query: 507 H 509
           H
Sbjct: 198 H 198


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 208 TRCSSCFWSTPCSRRMVCPGTR*VEHN 128
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 208 TRCSSCFWSTPCSRRMVCPGTR 143
           TRC  C    P   R  CPG+R
Sbjct: 81  TRCKECLARAPAGVRQECPGSR 102


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 208 TRCSSCFWSTPCSRRMVCPGTR*VEHN 128
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,039,234
Number of Sequences: 37544
Number of extensions: 303168
Number of successful extensions: 686
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)