Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_G12
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 144 5e-35
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 137 8e-33
04_04_0148 - 23114000-23114113,23114215-23114350,23114813-231149... 30 1.7
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 3.0
06_03_0915 - 25929433-25930893 29 5.3
12_01_0582 - 4752576-4752786,4752955-4753037,4753324-4753530,475... 28 7.0
11_01_0710 - 5830475-5830595,5831498-5834124 28 7.0
08_01_0332 + 2971361-2971439,2971596-2971783,2971985-2972062,297... 28 7.0
03_05_0901 + 28635672-28636094,28637623-28637802,28637903-286381... 28 9.3
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 144 bits (350), Expect = 5e-35
Identities = 85/176 (48%), Positives = 105/176 (59%), Gaps = 5/176 (2%)
Frame = -1
Query: 629 KXKGYKGVTXRWHTKKLPP*DTPRFLGKLPALELGILXGCRSL*LVLVRKVIITVLK*TR 450
K KGY+GV RW +LP T R L K+ + G R V TV + +
Sbjct: 225 KGKGYEGVVTRWGVTRLPR-KTHRGLRKVACI--GAWHPAR---------VSYTVARAGQ 272
Query: 449 KSIVLDQGIHKKDGKVIKNN-----ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCC 285
++KK K+ K+ A TE+D +EK ITPMGGFPHYG V D++MIKGCC
Sbjct: 273 NGYHHRTEMNKKVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCC 332
Query: 284 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTPSKFGHGRFQTPADKAAFMGTLK 117
+GPKKR++TLR+SL T R ALE+I LKFIDT SKFGHGRFQT +K F G LK
Sbjct: 333 VGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 128 bits (310), Expect = 4e-30
Identities = 62/107 (57%), Positives = 75/107 (70%)
Frame = -3
Query: 753 IQLNGGTXEDQXNWAREHLEKPIPVDXVFAQDEMIDCIGVTQGQRIQRCHXSLAHKEATP 574
IQ+NGGT D+ ++ + EK IPVD VF +DEMID IGVT+G+ +
Sbjct: 184 IQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243
Query: 573 VRHTKVLRKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIYRIG 433
H + LRKVACIGAWHP RVS+TVARAGQ GYHHRTEMNKK+Y+IG
Sbjct: 244 KTH-RGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 289
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 137 bits (332), Expect = 8e-33
Identities = 81/168 (48%), Positives = 101/168 (60%), Gaps = 5/168 (2%)
Frame = -1
Query: 629 KXKGYKGVTXRWHTKKLPP*DTPRFLGKLPALELGILXGCRSL*LVLVRKVIITVLK*TR 450
K KGY+GV RW +LP T R L K+ + G R V TV + +
Sbjct: 225 KGKGYEGVVTRWGVTRLPR-KTHRGLRKVACI--GAWHPAR---------VSYTVARAGQ 272
Query: 449 KSIVLDQGIHKKDGKVIKNN-----ASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCC 285
++KK K+ K+ A TE+D +EK ITPMGGFPHYG V D++MIKGCC
Sbjct: 273 NGYHHRTEMNKKVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCC 332
Query: 284 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTPSKFGHGRFQTPADK 141
+GPKKR++TLR+SL T R ALE+I LKFIDT SKFGHGRFQT +K
Sbjct: 333 VGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380
Score = 128 bits (310), Expect = 4e-30
Identities = 62/107 (57%), Positives = 75/107 (70%)
Frame = -3
Query: 753 IQLNGGTXEDQXNWAREHLEKPIPVDXVFAQDEMIDCIGVTQGQRIQRCHXSLAHKEATP 574
IQ+NGGT D+ ++ + EK IPVD VF +DEMID IGVT+G+ +
Sbjct: 184 IQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243
Query: 573 VRHTKVLRKVACIGAWHPXRVSFTVARAGQKGYHHRTEMNKKIYRIG 433
H + LRKVACIGAWHP RVS+TVARAGQ GYHHRTEMNKK+Y+IG
Sbjct: 244 KTH-RGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 289
>04_04_0148 -
23114000-23114113,23114215-23114350,23114813-23114912,
23115003-23115113,23115197-23115234,23115359-23115429,
23116998-23117176,23117272-23117389
Length = 288
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = -3
Query: 684 PVDXVFAQDEMIDCIGVTQGQRIQRCHXSLAHKEATPVRHTKVLRKVACIGAWHPXRVSF 505
P +F + CIG G +I R + H +++PVR+ + L K G +P F
Sbjct: 153 PTIPIFGVCMGLQCIGEAFGGKIIRAPSGVMHGKSSPVRYDEELGKALFNGLPNP----F 208
Query: 504 TVAR 493
T AR
Sbjct: 209 TAAR 212
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 374 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 279
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>06_03_0915 - 25929433-25930893
Length = 486
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 333 GETSHRCNGFLRQIILSRCIVFNNFAILFVDSLVQYDRFSCSFQY 467
GE H+ G I+ C++ NN +L V ++ D S S ++
Sbjct: 138 GEVVHKALGRPASIVAQMCVIINNAGVLIVYLIIIGDVMSGSLKH 182
>12_01_0582 -
4752576-4752786,4752955-4753037,4753324-4753530,
4755128-4755207,4756853-4756998,4757088-4757719
Length = 452
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +1
Query: 346 IGVMDFSDRSYSVDALFLITLPSFLWIPWSNTIDFLVHFSTVMI 477
+ +DF + ++ +L LPS W W + + + VH ++ I
Sbjct: 392 LSAIDFLKHAADLNTRWLKRLPSNFWATWVHPLTYKVHVKSLWI 435
>11_01_0710 - 5830475-5830595,5831498-5834124
Length = 915
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 644 QSIISSWANTXSTGIGFSKCSLAQFXWSSKVPPLS 748
+S+ISSW + TG S CS+ PLS
Sbjct: 650 ESVISSWGGSVHTGTSSSSCSVTNLVVKFCTLPLS 684
>08_01_0332 +
2971361-2971439,2971596-2971783,2971985-2972062,
2972354-2972425,2972513-2972631,2972858-2972942,
2973096-2973185,2973268-2973369,2973448-2973624,
2973874-2973954,2974511-2974582,2974662-2974756,
2974831-2974919,2975016-2975078,2975161-2975204,
2975554-2975685
Length = 521
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 3 FFFFFFALSNVYFHGLHLRL 62
FFFFFF +N+ FH L+ L
Sbjct: 307 FFFFFFFCANILFHHLNYLL 326
>03_05_0901 +
28635672-28636094,28637623-28637802,28637903-28638172,
28638506-28638757,28639205-28639453,28639533-28639606,
28639798-28639915,28640421-28640555,28640813-28640965
Length = 617
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 498 ARAGQKGYHHRTEMNKKIYRIGPRNPQ 418
+RA GY + +E N +IYR+ R+P+
Sbjct: 590 SRADNLGYEYMSEQNNEIYRLLLRDPK 616
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,022,332
Number of Sequences: 37544
Number of extensions: 447586
Number of successful extensions: 1161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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