Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_G08
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 31 0.89
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365... 29 2.7
12_01_0399 + 3152219-3152721,3152995-3153127,3155013-3155097,315... 29 4.7
09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351 29 4.7
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 29 4.7
07_03_1455 - 26659480-26659758,26659907-26660149 29 4.7
01_06_1141 + 34845834-34845931,34846110-34846198,34846535-348466... 28 6.2
03_06_0199 + 32310272-32311432 28 8.3
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 31.1 bits (67), Expect = 0.89
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 173 RPIPSEVRTRMR*GGYRGQHYNQTARLTPRNAQP 274
R PSE+R+R R G RG+ Y+Q +PR + P
Sbjct: 121 RKKPSEMRSRDRISGSRGRSYDQRYSRSPRYSPP 154
>07_03_0111 +
13535912-13535972,13536081-13536142,13536418-13536510,
13537577-13537649,13537876-13538265,13538337-13538404,
13539334-13539375,13540211-13540735,13540817-13540974,
13541078-13541636,13542438-13542500,13542579-13542680,
13542779-13543096,13543175-13543267,13543489-13543590,
13543678-13543782,13544190-13544323,13545097-13545280,
13545701-13545832,13546215-13546327,13546468-13546558,
13547138-13549339
Length = 1889
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 135 PPTKRLPCTLTPDVRSPPRSEPG*GRGATAVNTTTRRRGSPQGTPS 272
PP P D + P EP + +A T RR GSP +P+
Sbjct: 123 PPPPPPPPPSPKDAAADPAKEPSGSKAGSAAATGGRRTGSPPPSPA 168
>12_01_0399 +
3152219-3152721,3152995-3153127,3155013-3155097,
3155321-3155586
Length = 328
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 145 NDSPALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKERPADGAF 285
+DSPA+ PT P P + P +P G AH + D AF
Sbjct: 54 DDSPAISDPTPPP-----PPPMAATPAPAPRPPGGAHMRSLSLDTAF 95
>09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351
Length = 415
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Frame = +3
Query: 93 HGVVSRPRAQGF*DPPT-KRLPCTLTPDV-----RSPPRSEPG*GRGATAVNTTTRRRGS 254
HG +S PR+ P +R P +TP V RSP P RG A + + RG
Sbjct: 50 HGALSAPRSGDEEITPWWRRSPSAVTPPVYPHVERSP---SPPIARGWPADDDERQERGE 106
Query: 255 PQGTPS 272
P G+P+
Sbjct: 107 PSGSPA 112
>07_03_1783 + 29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 142 LNDSPALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKERPADGAFXA-NRRSETRXS 318
LN +P L P + P+ LPRSTL G A +++PA A + N+ +ET S
Sbjct: 1160 LNKNPVLKAPLVE--HANQPNVRSTLPRSTLVVLGLAEDQQQPAPQAQSSQNQAAETSSS 1217
>07_03_1455 - 26659480-26659758,26659907-26660149
Length = 173
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 145 NDSPALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKERP 270
N + + LHPT+ PLR P G L +T +P PKE P
Sbjct: 82 NPAASSLHPTAPPLRA-GP---GHLRPATRRPPRQVRPKENP 119
>01_06_1141 +
34845834-34845931,34846110-34846198,34846535-34846686,
34847473-34847583,34847702-34847818,34847989-34848156,
34848563-34848703
Length = 291
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 136 HPLNDSPALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAH 255
HPL P +P G P++ G PR T+ +GAAH
Sbjct: 91 HPLPQVPNFCGNGFNPWTGTLPEK-NGFPRGTMGWEGAAH 129
>03_06_0199 + 32310272-32311432
Length = 386
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 80 SHIPRAPLLRGDLVGGSALYPKKKKK 3
S PR PLLRG + GGSA + + +K
Sbjct: 203 SREPRVPLLRGGIRGGSAAHLQDGQK 228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,621,284
Number of Sequences: 37544
Number of extensions: 276529
Number of successful extensions: 857
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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