Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_G08
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006610-7|AAK85451.1|  392|Caenorhabditis elegans Hypothetical ...    32   0.35 
Z81579-5|CAB04654.3| 1305|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1...    29   2.4  
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1...    29   2.4  
AY959881-1|AAX56914.1| 1305|Caenorhabditis elegans nephrocystin-...    29   2.4  
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.      29   2.4  

>AC006610-7|AAK85451.1|  392|Caenorhabditis elegans Hypothetical
           protein C30F12.5 protein.
          Length = 392

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = +1

Query: 112 RGPKDFRTHPLN----DSPALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKERPA 273
           +G KD+    +     D P + HP   PL   +P   G +PR+ L P+GA  P   P+
Sbjct: 303 KGQKDYENGSMGQLPIDEPRIGHPLYSPLPPIDPT-YGTIPRARLAPNGAPPPPLSPS 359


>Z81579-5|CAB04654.3| 1305|Caenorhabditis elegans Hypothetical
           protein R13H4.1 protein.
          Length = 1305

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 271 ADGAFXANRRSETRXSRYGXPSGPPNGAXVFRNTXWNQNXLPVXNQK 411
           +DGAF + +  ETR S  G P   P G   ++N     + L   N+K
Sbjct: 366 SDGAF-SGKEVETRVSFVGGPRPNPEGVLCYKNVLNQPDSLKPLNEK 411


>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
            isoform a protein.
          Length = 1409

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 149  SFSGWVLKSLGPRSAHNTMQIVESHIPRAPLLRG 48
            S++GW   S+ P+SA++ M ++E  + R   L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335


>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
            isoform b protein.
          Length = 1444

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 149  SFSGWVLKSLGPRSAHNTMQIVESHIPRAPLLRG 48
            S++GW   S+ P+SA++ M ++E  + R   L G
Sbjct: 1337 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1370


>AY959881-1|AAX56914.1| 1305|Caenorhabditis elegans
           nephrocystin-4-like protein protein.
          Length = 1305

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 271 ADGAFXANRRSETRXSRYGXPSGPPNGAXVFRNTXWNQNXLPVXNQK 411
           +DGAF + +  ETR S  G P   P G   ++N     + L   N+K
Sbjct: 366 SDGAF-SGKEVETRVSFVGGPRPNPEGVLCYKNVLNQPDSLKPLNEK 411


>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
          Length = 1409

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 149  SFSGWVLKSLGPRSAHNTMQIVESHIPRAPLLRG 48
            S++GW   S+ P+SA++ M ++E  + R   L G
Sbjct: 1302 SYTGWPSDSIVPKSANSLMNLIEMVLQRQSSLMG 1335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,865,416
Number of Sequences: 27780
Number of extensions: 211940
Number of successful extensions: 688
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)