Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_G06
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296     46   3e-05
12_02_0090 + 13493311-13494180                                         30   1.8  
03_04_0193 + 18344984-18345946                                         29   3.2  
03_02_0574 + 9575496-9575517,9575636-9576418,9576754-9577163,957...    29   3.2  
04_04_0765 - 27910189-27912393,27912521-27912598                       29   5.5  
02_03_0120 + 15463163-15465250                                         29   5.5  
02_04_0657 + 24786717-24786924,24786925-24786965,24787379-247875...    28   9.6  
01_06_0196 - 27410837-27413296                                         28   9.6  

>10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296
          Length = 247

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = -3

Query: 377 EGRRCREC-KPGFFNLDLQNEFGCTPCFCFGHSSQ-CSSAPKYQVHDISAHFIRDSEKWD 204
           E R C  C KPG    +  NE  C  C   GH ++ C + P   + ++S H  R+  K D
Sbjct: 120 EMRLCSNCYKPGHLAAECTNEKACNNCRKSGHLARNCPNEPVCNLCNVSGHLARECPKSD 179

Query: 203 AVDETGKP 180
           A++E G P
Sbjct: 180 AINERGGP 187


>12_02_0090 + 13493311-13494180
          Length = 289

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -1

Query: 439 RTATPLSAT-RRPVSVCANRTSRADAVGSASPASSI*IYRTSLDAHPASASA 287
           + ATP+ AT RRP +V A  T  A +  +A   ++I +  T+    PA+AS+
Sbjct: 67  QAATPIPATTRRPSAVVATSTPTAPSQTTAPSLATILVPATTSAPKPATASS 118


>03_04_0193 + 18344984-18345946
          Length = 320

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/73 (27%), Positives = 36/73 (49%)
 Frame = -1

Query: 454 VTSPGRTATPLSATRRPVSVCANRTSRADAVGSASPASSI*IYRTSLDAHPASASAIRPS 275
           V S G+      ++  PV   A R  R+D++  A+ ASS   + +  D+  AS+S+   S
Sbjct: 57  VFSDGKLLPLRLSSANPVEAAALRLLRSDSLDGATTASSASGFSSRSDSRSASSSSSSSS 116

Query: 274 AVQLRNTRFTISA 236
            V    ++ + S+
Sbjct: 117 CVSRSTSQKSASS 129


>03_02_0574 +
           9575496-9575517,9575636-9576418,9576754-9577163,
           9577246-9578079
          Length = 682

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = -1

Query: 445 PGRTATPLSATRRPVSVCANRTSRADAVGSASPASSI*IYRTSLDAHPASASAIRPSAVQ 266
           P    +P  A RRP  V ++   R D   +ASP+ S  +   S  ++    S  RP  V 
Sbjct: 29  PALDLSPPRAVRRPGLVMSHSGKRLDQSPAASPSPSRPVLVMSHSSNRLDQSPARPVLVM 88

Query: 265 LRNT-RFTISALISFETRRSGMLLM 194
            R++ R   S   S  + R  +L+M
Sbjct: 89  SRSSNRLDQSPASSPASSRGPVLVM 113


>04_04_0765 - 27910189-27912393,27912521-27912598
          Length = 760

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -1

Query: 460 AAVTSPGRTATPLSATRRPVSVCANRTSRADAVGSASPASS-I*IYRTSLDAHPASASAI 284
           AAV + G TA  + A   PV+  A  +S      S+SPA+S + I   S     A A+  
Sbjct: 401 AAVAAAGSTAPAVVAPDSPVAAVAVFSSPTAVAASSSPAASPVDIVAASSSPAAAVAAFG 460

Query: 283 RPSAVQLRNT 254
            P+ V   N+
Sbjct: 461 SPAVVVASNS 470


>02_03_0120 + 15463163-15465250
          Length = 695

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = -1

Query: 541 KPGVTRGQV*RLCAEPLRVYEPKDASLAAVTSPGRTATPLSATRR 407
           + GV  G+   L +EP+R+  P+DA  AA  S  R ATP S + R
Sbjct: 68  RDGVGAGRA--LFSEPVRLLLPQDA--AASASASRAATPASFSTR 108


>02_04_0657 +
           24786717-24786924,24786925-24786965,24787379-24787521,
           24787597-24787774,24788054-24788123,24788197-24788345,
           24788491-24788586,24789213-24789283,24789879-24789940,
           24790175-24790238,24790326-24790410,24790515-24790641,
           24790714-24790775,24790863-24790923,24790987-24791147,
           24791355-24791648
          Length = 623

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -1

Query: 439 RTATPLSATRRPVSVCAN-RTSRADAVGSASPASSI*IYRTSLDAHPASASAIRPSAVQ 266
           +TA  L   RRP S   N  TSR   + S+ P+S   I     +  P S+ + RPS +Q
Sbjct: 525 KTAVDLDK-RRPTSSSRNGSTSRKALLSSSRPSSGDPIDPNRSNLIPTSSGSSRPSTMQ 582


>01_06_0196 - 27410837-27413296
          Length = 819

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 368 RCRECKPGFFNLDLQN-EFGCTPCFCFGHSSQCSSAP 261
           RC  C PG+  +D ++   GC P F  G+ SQ S+ P
Sbjct: 302 RC-SCLPGYEMVDRRDWRRGCKPTFPVGNCSQGSAPP 337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,045,755
Number of Sequences: 37544
Number of extensions: 457965
Number of successful extensions: 1370
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)