Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_G06
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    26   0.34 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   4.2  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   4.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.4  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   9.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.8  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 4/100 (4%)
 Frame = -3

Query: 635 PRVPEDTCLPCNCNPTGXRSLQCNAEGQVPMQARSDQGTSVTPVRR----TITSLRTQGC 468
           PR  E+ CL C    +G        EG      RS    +V   +      I     + C
Sbjct: 180 PRQQEELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNNCEIDMYMRRKC 239

Query: 467 KPCGCNESGSYGNTPQCDPQTGVCLCKQNVEGRRCRECKP 348
           + C   +  + G  P+C      C  K+  E  +  + KP
Sbjct: 240 QECRLKKCLTVGMRPECVVPEYQCAVKRKEEKAQKEKDKP 279


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
 Frame = -3

Query: 287 HSSQCSSAPKYQVHDIS-AHFIRDSEKWDAVDETGK------PAQLQFNANTQNIAVVSK 129
           +++Q   +PK    D++ +  ++  E    V  TGK        Q   + NT    V +K
Sbjct: 149 NNTQPMCSPKLFAFDLNTSQLLKQVEIPHDVATTGKGELVSLTVQAMDSTNTMVYMVDNK 208

Query: 128 NTEIVYFLAPNQFLGDQRPSYNHD 57
           NT I+Y  A + F      + NH+
Sbjct: 209 NTLIIYQNADDSFHRLSSHTLNHN 232


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 446 SGSYGNTPQCDPQTGVCLCKQNVEGRR 366
           SGS G+      Q   C+ +QNVEG+R
Sbjct: 233 SGSKGSNINIS-QVIACVGQQNVEGKR 258


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -1

Query: 505 CAEPLRVYEPKDASLAAVTSPGRTATPLSATRRPVSVCANRTS 377
           C    ++  P D+ + + T         SA+  P SVC++  S
Sbjct: 568 CPRFRKLDSPSDSGIESGTEKPDKPASSSASSAPTSVCSSPRS 610


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +1

Query: 379 TFCLHRQTPVCGSH*GVLPYDPDSLQPQGLHPWVRK 486
           T CL  +   C S+  V+   PD ++      W+++
Sbjct: 172 TDCLRSELAQCESNIKVISISPDLVETDMTAQWLKE 207


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 92   IDSAQGNKRSRYSLT 136
            +++AQGN +  Y+LT
Sbjct: 1386 VENAQGNDKLHYTLT 1400


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 92   IDSAQGNKRSRYSLT 136
            +++AQGN +  Y+LT
Sbjct: 1382 VENAQGNDKLHYTLT 1396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,669
Number of Sequences: 438
Number of extensions: 4454
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)