Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_G04
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 34 0.019
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 0.074
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 0.13
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.14
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 1.3
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 5.2
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 34.3 bits (75), Expect = 0.019
Identities = 29/115 (25%), Positives = 34/115 (29%), Gaps = 4/115 (3%)
Frame = +2
Query: 431 PPRXLSXXPXXXXPPPPPPPXXXLXXLRPXLXTPXGXPPXLRXXVXPAXPPXXXR---VP 601
PP S PPP P P + P + P G PP P P VP
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEI----PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVP 1105
Query: 602 XXXXSXXP-XSRRGPPXXPANXXSPXXXPXPXPXPXAPXXXERXPXXXXPXXXPP 763
+ P + G P P + P P P P P P PP
Sbjct: 1106 KPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160
Score = 29.9 bits (64), Expect = 0.42
Identities = 28/112 (25%), Positives = 30/112 (26%), Gaps = 9/112 (8%)
Frame = +2
Query: 455 PXXXXPPPPPP----PXXXLXXLRPXLXTPXGXPPXLRXXVX-PAXPPXXXRVPXXXXSX 619
P PP P P P P + P G PP + V P P P S
Sbjct: 1107 PSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSV 1166
Query: 620 X----PXSRRGPPXXPANXXSPXXXPXPXPXPXAPXXXERXPXXXXPXXXPP 763
P G P P P P P P P P PP
Sbjct: 1167 AAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Score = 28.7 bits (61), Expect = 0.97
Identities = 24/110 (21%), Positives = 29/110 (26%)
Frame = +2
Query: 434 PRXLSXXPXXXXPPPPPPPXXXLXXLRPXLXTPXGXPPXLRXXVXPAXPPXXXRVPXXXX 613
P+ S P P PP + P + P PP + P P
Sbjct: 1015 PKLSSKAPPVPLPSADAPPIP-VPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEI 1073
Query: 614 SXXPXSRRGPPXXPANXXSPXXXPXPXPXPXAPXXXERXPXXXXPXXXPP 763
P + G P PA P P P P P PP
Sbjct: 1074 PSIP-APSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPP 1122
Score = 27.5 bits (58), Expect = 2.2
Identities = 27/133 (20%), Positives = 31/133 (23%)
Frame = +3
Query: 306 PQFLKRGGKXXPPXPGGGPPXGXXXXTKKXTXGXXLQXXPPXPPXPXXXXPXXXXPXPPX 485
P G P P G PP + P P P PP
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPV 1133
Query: 486 XXXXXXVXFAPLXXXXTAAPPXSVLXWXRRXPXXLXXSPXXPXXXXXXXGGXPPXXPXTX 665
P+ AAPP P +P P P
Sbjct: 1134 PVPSGA---PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
Query: 666 XPPXXVXPPXPRP 704
PP PP P+P
Sbjct: 1191 VPPPSEAPPVPKP 1203
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect(2) = 0.074
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 443 LSXXPXXXXPPPPPPP 490
++ P PPPPPPP
Sbjct: 1 MASLPPGNPPPPPPPP 16
Score = 25.4 bits (53), Expect(2) = 0.074
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +2
Query: 470 PPPPPPPXXXLXXLRPXLXTPXG 538
PPPPPPP +P P G
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPG 31
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 3.0
Identities = 21/77 (27%), Positives = 23/77 (29%)
Frame = +2
Query: 473 PPPPPPXXXLXXLRPXLXTPXGXPPXLRXXVXPAXPPXXXRVPXXXXSXXPXSRRGPPXX 652
PPPPPP + P P PP P PP P P PP
Sbjct: 732 PPPPPPAVIVPTPAP---APIPVPPPAPIMGGPPPPPP----PPGVAGAGPPPPPPPPPA 784
Query: 653 PANXXSPXXXPXPXPXP 703
+ S P P P
Sbjct: 785 VSAGGSRYYAPAPQAEP 801
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/40 (32%), Positives = 13/40 (32%)
Frame = +1
Query: 364 PXXXXXPPKXKPPAXIXXXXXPTPPXPXXXXXXXXXPXPP 483
P P PPA I P PP P P PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 25.0 bits (52), Expect(2) = 0.13
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 455 PXXXXPPPPPPP 490
P PPPPPPP
Sbjct: 756 PIMGGPPPPPPP 767
Score = 25.0 bits (52), Expect(2) = 0.13
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +2
Query: 470 PPPPPPPXXXLXXLRPXLXTPXGXP 544
PPPPPPP R P P
Sbjct: 777 PPPPPPPAVSAGGSRYYAPAPQAEP 801
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.14
Identities = 20/87 (22%), Positives = 25/87 (28%)
Frame = +2
Query: 473 PPPPPPXXXLXXLRPXLXTPXGXPPXLRXXVXPAXPPXXXRVPXXXXSXXPXSRRGPPXX 652
P PP P + TP PP + P+ PP P + PP
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
Query: 653 PANXXSPXXXPXPXPXPXAPXXXERXP 733
+P P P AP P
Sbjct: 461 AGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 27.5 bits (58), Expect = 2.2
Identities = 26/101 (25%), Positives = 29/101 (28%), Gaps = 8/101 (7%)
Frame = +2
Query: 455 PXXXXPPPPPPPXXXLXXLR--PXLXT------PXGXPPXLRXXVXPAXPPXXXRVPXXX 610
P PPPPPP R P L + P PP + PA PP
Sbjct: 355 PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP-LGNASRTS 413
Query: 611 XSXXPXSRRGPPXXPANXXSPXXXPXPXPXPXAPXXXERXP 733
P PP P + P P AP P
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP 454
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.0 bits (52), Expect(2) = 1.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 455 PXXXXPPPPPPP 490
P PPPPPPP
Sbjct: 942 PAFPPPPPPPPP 953
Score = 21.4 bits (43), Expect(2) = 1.3
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 473 PPPPPPXXXL 502
PPPPPP L
Sbjct: 945 PPPPPPPPPL 954
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 222 GXGXKRGGXAPQKXXXFXXKNXGXXGGGPQFLKRGG 329
G G RGG F + G GGG + RGG
Sbjct: 146 GRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGG 181
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,359,466
Number of Sequences: 5004
Number of extensions: 17856
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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