Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_G04
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.2  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   9.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 470  PPPPPPP 490
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 470  PPPPPPP 490
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 446 SXXPXXXXPPPPPP 487
           S  P    PPPPPP
Sbjct: 335 SDTPPKPAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 306 PQFLKRGGKXXPPXPGGGPPXG 371
           PQ  +RG    PP P  GPP G
Sbjct: 31  PQAPQRGS---PPNPSQGPPPG 49


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 245  PPPFXPXPF 219
            PPPF P PF
Sbjct: 1166 PPPFMPSPF 1174


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 455  PXXXXPPPPPPP 490
            P    P PPPPP
Sbjct: 1852 PVSGSPEPPPPP 1863


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = -2

Query: 319 FKNWGPPPXXPXFFXXXKXXFWGAXPPLFXP 227
           F++ GPP   P F       F     P F P
Sbjct: 373 FRHIGPPTPFPRFIPPNAYRFRPPLNPRFGP 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,919
Number of Sequences: 438
Number of extensions: 4468
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)