Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_G03
         (782 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AC024761-13|AAP13758.1|  353|Caenorhabditis elegans Peroxiredoxi...    28   8.7  
AC024761-12|AAM97969.1|  387|Caenorhabditis elegans Peroxiredoxi...    28   8.7  

>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 309  EPGPGAKGEGTGREVPARAHAEPREGRP 226
            +PGP   G+ T +++PA++  +   GRP
Sbjct: 2972 QPGPIQTGQSTQQQIPAQSQQQYNSGRP 2999


>AC024761-13|AAP13758.1|  353|Caenorhabditis elegans Peroxiredoxin
           protein 6, isoform c protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 202 RFFFFLAAWSPLSWLGVRTSGYLSACSFALRSGSRL 309
           +F F +  W PL  L   TSG +  C+  L+ G+ L
Sbjct: 160 KFIFKIPGWRPLCKLFSITSGTVEECTEELKEGNLL 195


>AC024761-12|AAM97969.1|  387|Caenorhabditis elegans Peroxiredoxin
           protein 6, isoform a protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 202 RFFFFLAAWSPLSWLGVRTSGYLSACSFALRSGSRL 309
           +F F +  W PL  L   TSG +  C+  L+ G+ L
Sbjct: 160 KFIFKIPGWRPLCKLFSITSGTVEECTEELKEGNLL 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,278,799
Number of Sequences: 27780
Number of extensions: 198186
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)