Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_G03
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.2  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   4.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   7.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   7.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.8  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 324 VRRGLEPGPGAKGEGTGREVPARAHAEPREGR 229
           ++ G EPG G   +  G   P  AH   R+GR
Sbjct: 167 LQMGFEPGKGLGKQLQGISTPVEAHL--RKGR 196


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -2

Query: 250 RRATRGETMPPRKRRN-EAHRP 188
           RRAT G+  P RK+R  E  RP
Sbjct: 11  RRATGGKRKPIRKKRKFELGRP 32


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 283 FALRSGSRLEPSTNR 327
           F +   SRLEP TN+
Sbjct: 230 FGMTDNSRLEPGTNK 244


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 205 FFFFLAAWSP 234
           FF FL AW+P
Sbjct: 288 FFLFLLAWTP 297


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 205 FFFFLAAWSP 234
           FF FL AW+P
Sbjct: 288 FFLFLLAWTP 297


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -1

Query: 482 SGXXYHRHPEFTXSIPLATFQLLPSIPYCTHAVAE 378
           +G     +P+   S   A   L+PS P C  A  E
Sbjct: 383 NGKTTEENPKSIKSGDAAIVMLVPSKPMCAEAFQE 417


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,161
Number of Sequences: 438
Number of extensions: 3306
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)