Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_G02
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 34 0.13
06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797 32 0.51
11_06_0610 - 25449085-25453284 31 0.89
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 31 1.5
01_06_0146 + 26969011-26969995,26970878-26970930 29 4.7
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 6.2
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 29 6.2
07_03_1136 + 24218601-24218734,24218769-24219906 25 7.2
12_02_1174 - 26696869-26698191 28 8.3
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 28 8.3
05_04_0303 - 20010761-20011756 28 8.3
02_05_0591 - 30183105-30183869 28 8.3
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 34.3 bits (75), Expect = 0.13
Identities = 17/68 (25%), Positives = 21/68 (30%)
Frame = +1
Query: 529 PXXXPPRGXRXGXXPXPXDXXXXXPSXXXGXXXPXXSRGGPPQXXSGXPXXXPXXPQSSP 708
P PP+ P P P G P ++G PP P P P
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGK 373
Query: 709 RXXPXLPP 732
+ P PP
Sbjct: 374 KGGPPPPP 381
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/62 (25%), Positives = 19/62 (30%)
Frame = +1
Query: 394 PXPSXXPXXRXGFXXPXPRXXXLXXMXRXPVXPRSPXPXXPXSXXPXXXPPRGXRXGXXP 573
P P P + P P P P+ P P P P PP+G P
Sbjct: 311 PAPPPPPPPKPAAAAPPPPPPP--KAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPP 368
Query: 574 XP 579
P
Sbjct: 369 PP 370
>06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797
Length = 216
Score = 32.3 bits (70), Expect = 0.51
Identities = 17/58 (29%), Positives = 18/58 (31%)
Frame = +1
Query: 481 PVXPRSPXPXXPXSXXPXXXPPRGXRXGXXPXPXDXXXXXPSXXXGXXXPXXSRGGPP 654
P P P P P P PP G P P PS G P + PP
Sbjct: 62 PTKPALPAPLPPTPASPGDSPPSIAPAGNPPTPAQAGAPPPSIAPGTGSPPPATTTPP 119
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 31.5 bits (68), Expect = 0.89
Identities = 22/80 (27%), Positives = 25/80 (31%), Gaps = 1/80 (1%)
Frame = +1
Query: 496 SPXPXXPXSXXPXXXPPRGXRXGXXPXPXDXXXXXP-SXXXGXXXPXXSRGGPPQXXSGX 672
SP P P S PP G P + P S P + PPQ
Sbjct: 478 SPTPSSPESPAKMAPPPAPAIKGVTSPPAEYGAPPPPSSGWLPKSPERKKAPPPQAEPPT 537
Query: 673 PXXXPXXPQSSPRXXPXLPP 732
P P+SSP PP
Sbjct: 538 EYSPPATPESSPPPEGKSPP 557
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -2
Query: 310 GPPPPXXPXGXXLEKXXPFXGGAPXP 233
GPPPP P G + PF AP P
Sbjct: 73 GPPPPQRPFGAGPPQQGPFAAAAPPP 98
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 29.1 bits (62), Expect = 4.7
Identities = 21/90 (23%), Positives = 23/90 (25%), Gaps = 1/90 (1%)
Frame = +1
Query: 481 PVXPRSPXPXXPXSXXPXXXP-PRGXRXGXXPXPXDXXXXXPSXXXGXXXPXXSRGGPPQ 657
P P P P P S P P P P P P PQ
Sbjct: 39 PQNPTPPPPPLPASAAAPTTPSPNHSGDPSRPIPSQAPAPPPPPTADPSPPLPHDNRTPQ 98
Query: 658 XXSGXPXXXPXXPQSSPRXXPXLPPXXXXP 747
+ P + P P LPP P
Sbjct: 99 PRAAPPPAPAPDQPAPPSPPPSLPPSPPAP 128
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 28.7 bits (61), Expect = 6.2
Identities = 22/86 (25%), Positives = 23/86 (26%)
Frame = +1
Query: 499 PXPXXPXSXXPXXXPPRGXRXGXXPXPXDXXXXXPSXXXGXXXPXXSRGGPPQXXSGXPX 678
P P P PP G P P D P P PP S P
Sbjct: 1124 PLPDGPPPLPLDAPPPPPLPEGPPPLPSDSPPCQPPLPPSPP-PATPPPPPPLSPSLPPP 1182
Query: 679 XXPXXPQSSPRXXPXLPPXXXXPXXV 756
P S P P PP P +
Sbjct: 1183 PPPPPLPSGPPPQPAPPPLPIQPPPI 1208
>01_06_0823 +
32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +1
Query: 481 PVXPRSPXPXXPXSXXPXXXPPRGXRXGXXPXPXD 585
P PRSP P P P PP+ P P +
Sbjct: 34 PASPRSPVPPPPGVPPPPPPPPQTLAAAASPRPEE 68
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 25.4 bits (53), Expect(2) = 7.2
Identities = 18/57 (31%), Positives = 20/57 (35%)
Frame = +3
Query: 219 GXXXXGXGAPPXNGXXFSKXXPXGXXGGGGPXLF*KXXGXXXXXPPGXRGSXRXXXP 389
G G GAP G ++ P G GGG P L G PP G P
Sbjct: 89 GLPPGGGGAPGPLGGGGARP-PGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAP 144
Score = 21.4 bits (43), Expect(2) = 7.2
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +3
Query: 507 PXXXXAXALGXSPXGGXXGXXPXXA 581
P ALG P GG G P A
Sbjct: 161 PGGGRGGALGRPPGGGGGGGGPGRA 185
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/86 (22%), Positives = 21/86 (24%)
Frame = +1
Query: 490 PRSPXPXXPXSXXPXXXPPRGXRXGXXPXPXDXXXXXPSXXXGXXXPXXSRGGPPQXXSG 669
P P P P PP P P PP +
Sbjct: 138 PHRPPPVKPQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTR 197
Query: 670 XPXXXPXXPQSSPRXXPXLPPXXXXP 747
P P Q P+ P LPP P
Sbjct: 198 PPSVKPPVVQPKPQPPPTLPPPSPPP 223
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/52 (34%), Positives = 19/52 (36%)
Frame = -2
Query: 367 PRXPGGXXXXXPXXF*KRXGPPPPXXPXGXXLEKXXPFXGGAPXPXFXXPPP 212
P P G P GPPPP P + P GAP P PPP
Sbjct: 11 PPPPQGGFPPQPPPM-NPYGPPPPQQPAYGHM----PPPQGAPPPFLAPPPP 57
>05_04_0303 - 20010761-20011756
Length = 331
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +3
Query: 213 GGGXXXXGXGAPPXNGXXFSKXXPXGXXGGGG 308
GGG G GA NG S G GGGG
Sbjct: 68 GGGGGGGGVGAGEMNGGASSAAGSSGGGGGGG 99
>02_05_0591 - 30183105-30183869
Length = 254
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 260 AVXGGGPXPPXXXPPPH 210
A+ GGG PP PPPH
Sbjct: 168 AMYGGGAVPPPPHPPPH 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,930,868
Number of Sequences: 37544
Number of extensions: 241268
Number of successful extensions: 864
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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