Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_F21
(765 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.33
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 29 3.1
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.1
07_03_0846 - 21983581-21986055 29 4.1
03_05_0183 - 21681673-21682524 29 4.1
07_03_1086 + 23858419-23859423,23859527-23859610 29 5.4
07_03_0414 + 17892133-17893590 28 7.1
01_06_0695 - 31292622-31293317 28 7.1
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 28 9.4
05_01_0580 + 5210002-5210170,5210466-5210524,5210883-5211668,521... 28 9.4
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.33
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 76 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 204
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 29.5 bits (63), Expect = 3.1
Identities = 23/85 (27%), Positives = 29/85 (34%)
Frame = +1
Query: 49 NRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPDGLR 228
+RS+ A R +S D P HR P R R K D R PD
Sbjct: 501 SRSRSPAEHQRRDVRNRLRSGRDGGGPDHRNSSPPVNRGRSRSRSKSRDPSKSRSPDAPA 560
Query: 229 RRVSRFECETRLVKSHCLEPPDSRG 303
++ S R S P S+G
Sbjct: 561 KKGSSKYNRRRSSSSRSSSPAGSKG 585
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 431 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 333
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +1
Query: 202 DLRDPDGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 351
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 643 SQAFIATLLFDPSMSALPIIAKQNSPS 563
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 5.4
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = -2
Query: 491 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 327
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 326 GKDMLTVEPRESGGSK 279
G L V E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204
>07_03_0414 + 17892133-17893590
Length = 485
Score = 28.3 bits (60), Expect = 7.1
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +3
Query: 423 QMSETAVPLVLSSITIATTSHQ*GKTNLSHDGLIPAHVPF*WVNNPTL-GEFCFAMIGRA 599
Q + V + L S+T+ + T H GL+ A PF WV P + G A + A
Sbjct: 279 QADGSVVYVSLGSLTVISLEQF---TEFLH-GLVAAGYPFLWVLRPDMVGASQSAALREA 334
Query: 600 DIEGSKSNVAMNAWLPQ 650
KS + W PQ
Sbjct: 335 VAAAGKSKARVVEWAPQ 351
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +1
Query: 28 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 162
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +1
Query: 22 ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 201
+SPG L R HD +L KSST + R E SR +KT+S+
Sbjct: 734 DSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKTESV 790
Query: 202 D 204
+
Sbjct: 791 E 791
>05_01_0580 +
5210002-5210170,5210466-5210524,5210883-5211668,
5211898-5212737
Length = 617
Score = 27.9 bits (59), Expect = 9.4
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Frame = +1
Query: 79 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKT-DSIDLRDPD-GLRRRVSRFEC 252
S PR + +T E E+ L+ R+ ++ + +S L++ D +R ++ +
Sbjct: 142 SPAPRVSEEDATKTPEIFELREMVRSLQEREKTLELQLLESYGLQEQDVAVRELENQLKI 201
Query: 253 ETRLVKSHCL--EPPDSRGSTVSISLPDSARLASALEAFR 366
T K + L E S + L +S++LAS LEA R
Sbjct: 202 NTVESKLYTLKIESLQSENERLQAQLTESSKLASELEAAR 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,015,463
Number of Sequences: 37544
Number of extensions: 452001
Number of successful extensions: 1276
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -