Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_F19
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1174 - 26696869-26698191                                         30   1.8  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    28   7.1  
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    28   9.4  

>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 24/94 (25%), Positives = 26/94 (27%), Gaps = 1/94 (1%)
 Frame = +3

Query: 453 PXXXPXAXXPXXPXXPXXXXXPXXXPXPXPXSXXPXXXSXXPAXXPALSXXSXXXLSXXP 632
           P   P       P  P     P   P P P S  P      P   P+L   S       P
Sbjct: 138 PHRPPPVKPQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSP---PPPP 194

Query: 633 PXXFPXL-PXXXGPAXXPLXVXXXXXPPRXAPRV 731
           P   P + P    P   P        PP   P V
Sbjct: 195 PTRPPSVKPPVVQPKPQPPPTLPPPSPPPPPPTV 228


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 28/102 (27%), Positives = 28/102 (27%)
 Frame = +3

Query: 420  AXAXXXXXPXXPXXXPXAXXPXXPXXPXXXXXPXXXPXPXPXSXXPXXXSXXPAXXPALS 599
            A A     P  P   P       P  P     P   P   P    P   S  PA  P   
Sbjct: 1115 ALADQNELPPLPDGPPPLPLDAPPPPPLPEGPPPL-PSDSPPCQPPLPPSPPPATPPPPP 1173

Query: 600  XXSXXXLSXXPPXXFPXLPXXXGPAXXPLXVXXXXXPPRXAP 725
              S    S  PP   P LP   GP   P        PP   P
Sbjct: 1174 PLSP---SLPPPPPPPPLPS--GPPPQPAPPPLPIQPPPIPP 1210


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/78 (21%), Positives = 23/78 (29%)
 Frame = +1

Query: 532 PXXXPXXVPGXXXXXXXXXPPSLXXPXXXSPXLPRRXSPXXQXXSGPXPXPXRSXPXXXX 711
           P   P  +P          PP +  P   +P  P   +P       P P    + P    
Sbjct: 250 PPAAPGTLPNGSGGPPRPPPPQVPPPPPQAPPPPPPNAPMGMPPRIPPPPVGGTQPPPPP 309

Query: 712 PXLXPXXXXXLPPHXXXG 765
           P L       +PP    G
Sbjct: 310 PPLANGPPRSIPPPPMTG 327


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,019,659
Number of Sequences: 37544
Number of extensions: 108338
Number of successful extensions: 336
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)