Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_F17
         (1033 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       29   2.3  
09_03_0145 - 12749288-12751510                                         26   5.1  
07_03_1136 + 24218601-24218734,24218769-24219906                       29   5.4  
06_01_0601 + 4337575-4340149,4340566-4340978                           29   7.9  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    29   7.9  
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27...    24   8.4  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -1

Query: 748 PPPPPPPGG 722
           PPPPPPPGG
Sbjct: 364 PPPPPPPGG 372



 Score = 24.6 bits (51), Expect(2) = 2.3
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 749 PPPPPPPR 726
           PPPPPPP+
Sbjct: 326 PPPPPPPK 333



 Score = 24.2 bits (50), Expect(2) = 2.3
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 746 PPPPPPRG 723
           PPPPPP+G
Sbjct: 336 PPPPPPKG 343


>09_03_0145 - 12749288-12751510
          Length = 740

 Score = 26.2 bits (55), Expect(2) = 5.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 748 PPPPPPPG 725
           PPPPPPPG
Sbjct: 31  PPPPPPPG 38



 Score = 21.4 bits (43), Expect(2) = 5.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 745 PPPPPPGG 722
           PPPP PGG
Sbjct: 54  PPPPFPGG 61


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
 Frame = +2

Query: 539 GGGKXXXXXXXPXXXKXGGGXXPP-PXPXXFXXVKKKXXXGGGGGG 673
           GGG        P     GGG  PP P         ++   GGGGGG
Sbjct: 110 GGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGG 155



 Score = 25.4 bits (53), Expect(2) = 5.4
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +2

Query: 539 GGGKXXXXXXXPXXXKXGGGXXPPPXPXXFXXVKKKXXXGGGGGGG 676
           GGG        P     GGG              K    GGGGGGG
Sbjct: 336 GGGGGAGGVFPPTPDLGGGGGGGGGGTKVRVCAPKDISGGGGGGGG 381



 Score = 22.2 bits (45), Expect(2) = 5.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 656 GGGGGGGXXXF 688
           GGGGGGG   F
Sbjct: 399 GGGGGGGGCCF 409


>06_01_0601 + 4337575-4340149,4340566-4340978
          Length = 995

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -1

Query: 748 PPPPPPPGG 722
           PPPPPPPGG
Sbjct: 742 PPPPPPPGG 750


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = -1

Query: 748  PPPPPPPGG 722
            PPPPPPPGG
Sbjct: 1109 PPPPPPPGG 1117


>12_01_0033 -
           272848-272943,274026-274169,274264-274375,274521-274702,
           274781-274912,275038-276330,279841-280545,280649-280695,
           280787-280865
          Length = 929

 Score = 23.8 bits (49), Expect(2) = 8.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 749 PPPPPPP 729
           PPPPPPP
Sbjct: 624 PPPPPPP 630



 Score = 23.0 bits (47), Expect(2) = 8.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 746 PPPPPPR 726
           PPPPPPR
Sbjct: 636 PPPPPPR 642


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,702,187
Number of Sequences: 37544
Number of extensions: 279626
Number of successful extensions: 21124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17356
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3036070960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)