Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_F17
         (1033 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   0.53 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect(2) = 0.53
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -3

Query: 746  PPPPPPRGXXXXXXXXXDXK 687
            PPPPPPR          D K
Sbjct: 1859 PPPPPPRNHDQNNSSFNDSK 1878



 Score = 20.6 bits (41), Expect(2) = 0.53
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 749  PPPPPPP 729
            P PPPPP
Sbjct: 1857 PEPPPPP 1863


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 749  PPPPPPP 729
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 748  PPPPPPP 728
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 749  PPPPPPP 729
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.8 bits (49), Expect = 2.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 748  PPPPPPP 728
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.0 bits (47), Expect = 4.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 748  PPPPPPPGG 722
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365



 Score = 22.6 bits (46), Expect = 5.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 749  PPPPPPPRG 723
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,999
Number of Sequences: 438
Number of extensions: 1569
Number of successful extensions: 21
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34467615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)