Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_F16
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.8  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.1  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = -1

Query: 526 PGXGXPPPXXGGGXXPPPXFFXXXXPPPPXXVFFXKK 416
           PG   PPP       PPP F     PPPP    + KK
Sbjct: 6   PGNPPPPP-------PPPGFEPPSQPPPPPPPGYVKK 35



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 277 GXPXPPPPPXGXXXP 233
           G P PPPPP G   P
Sbjct: 7   GNPPPPPPPPGFEPP 21



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 510 PPPPXGGGXXPPPXFFXXXXPPPP 439
           PPPP      PPP F     PPPP
Sbjct: 9   PPPPP-----PPPGFEPPSQPPPP 27



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 313 PPSPGXFXPNLXGXPXPPPPP 251
           PP P  F P     P PPPPP
Sbjct: 12  PPPPPGFEP--PSQPPPPPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +1

Query: 418 FXXKKXXGGGGGXXXKKXGGGXXPPPPGXGG 510
           F  +   GGG G      GGG   PPPG GG
Sbjct: 180 FHHRGHNGGGFGGF----GGGSGGPPPGPGG 206


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 510 PPPPXGGGXXPPPXFFXXXXPPPP 439
           PPPP   G  PPP       PPPP
Sbjct: 765 PPPPGVAGAGPPP-----PPPPPP 783



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 313 PPSPGXFXPNLXGXPXPPPPPXGXXXPXP 227
           PP+P      + G P PPPPP G     P
Sbjct: 753 PPAP------IMGGPPPPPPPPGVAGAGP 775



 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -1

Query: 328 LRXXDPPSPGXFXPNLXGXPXPPPPP 251
           L+   PP P    P     P P PPP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPP 754



 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
 Frame = -2

Query: 510 PPPPXGGG--XXPPPXFFXXXXPPPP 439
           PP P  GG    PPP       PPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPP 778


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,673,760
Number of Sequences: 5004
Number of extensions: 26246
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)