Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_F13
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    81   1e-16
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    81   2e-16
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual       26   4.7  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 2/100 (2%)
 Frame = -2

Query: 639 PGVGFXXXXXXXXXXXVPGGHXGRXVXWXQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKM 460
           PGV              PGGH GR V W +SAFG LD +FGS    ++ KKN+ LP+  +
Sbjct: 225 PGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENII 284

Query: 459 ANTDLTRLXKSDEIRKVLRA--PNKRVIRXTRKLNPLTNK 346
           +N D+TRL  SDEI+ +++A  P++      +K NPL NK
Sbjct: 285 SNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNK 324


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 81.0 bits (191), Expect = 2e-16
 Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 2/100 (2%)
 Frame = -2

Query: 639 PGVGFXXXXXXXXXXXVPGGHXGRXVXWXQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKM 460
           PGV              PGGH GR V W +SAFG LD +FGS    ++ KKN+ LP+  +
Sbjct: 225 PGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENII 284

Query: 459 ANTDLTRLXKSDEIRKVLRA--PNKRVIRXTRKLNPLTNK 346
           +N D+TRL  SDEI+ +++A  P++      +K NPL NK
Sbjct: 285 SNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNK 324


>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 596 FRRFXLLTFRNPTPG 640
           F RF L+TF NP PG
Sbjct: 15  FSRFPLITFSNPYPG 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,819
Number of Sequences: 5004
Number of extensions: 37267
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)