Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_F13
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                           95   7e-20
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...    92   5e-19
02_04_0073 - 19471254-19472681                                         29   3.7  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score = 94.7 bits (225), Expect = 7e-20
 Identities = 47/122 (38%), Positives = 68/122 (55%)
 Frame = -2

Query: 639 PGVGFXXXXXXXXXXXVPGGHXGRXVXWXQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKM 460
           PGV              PGGH GR V W +SAF +L+ ++G+++ PS +KK F LP+PKM
Sbjct: 230 PGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRPKM 289

Query: 459 ANTDLTRLXKSDEIRKVLRAPNKRVIRXTRKLNPLTNKQGDXETQSLRGRAEEESYLRAA 280
           AN DL R+  SDE++ V++  NK V R  ++ NPL N     +     G A + + L  A
Sbjct: 290 ANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEA 349

Query: 279 QK 274
            +
Sbjct: 350 AR 351


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score = 91.9 bits (218), Expect = 5e-19
 Identities = 47/122 (38%), Positives = 65/122 (53%)
 Frame = -2

Query: 639 PGVGFXXXXXXXXXXXVPGGHXGRXVXWXQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKM 460
           PGV              PGGH GR V W + AF +LD ++G + TP+ +KK F LP+PKM
Sbjct: 229 PGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPRPKM 288

Query: 459 ANTDLTRLXKSDEIRKVLRAPNKRVIRXTRKLNPLTNKQGDXETQSLRGRAEEESYLRAA 280
           AN DL+RL  SDE++ V++  NK V     + NPL N     +     G A + + L  A
Sbjct: 289 ANADLSRLINSDEVQSVVKPINKEVKLREARRNPLKNVAAVLKLNPYFGTARKMAALAEA 348

Query: 279 QK 274
            +
Sbjct: 349 AR 350


>02_04_0073 - 19471254-19472681
          Length = 475

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 551 SPHSAGLTPYSGHGRHHRNKR 489
           +P   G +P S HG HHR+++
Sbjct: 20  APRPRGASPLSSHGHHHRSRK 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,513,911
Number of Sequences: 37544
Number of extensions: 294270
Number of successful extensions: 651
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)