Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_F13
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    77   1e-14
Z69661-4|CAA93491.1|  238|Caenorhabditis elegans Hypothetical pr...    31   0.83 
Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U21320-7|AAA62533.1|  558|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p...    28   5.9  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
 Frame = -2

Query: 639 PGVGFXXXXXXXXXXXVPGGHXGRXVXWXQSAFGRLDPLFGSWKTPSKQ-KKNFNLPQPK 463
           PGV              PGGH GR + W +SAF +LD ++G+    S Q KK +++P P 
Sbjct: 224 PGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLKKGWSVPLPI 283

Query: 462 MANTDLTRLXKSDEIRKVLRAPNKRVIRXTRKLNPLTNK 346
           MAN+D +R+ +S+E+ K +RAP K  +      NPL  +
Sbjct: 284 MANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKKR 322


>Z69661-4|CAA93491.1|  238|Caenorhabditis elegans Hypothetical
           protein F48F7.6 protein.
          Length = 238

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = -2

Query: 498 KQKKNFNLPQPKMANTDLTRLXKSDEIRKVLRA--PNKRVIRXTRKLNPLTNKQGDXETQ 325
           K+ KN  LPQ K  +  L    + + I  ++ A   NK++I          NK+   E +
Sbjct: 36  KKTKNMTLPQKKAESAFLMICLQRNTIELMVTALLANKKIIDSKGNCAFCRNKKQHEEEK 95

Query: 324 SLRGRAEEESYLRAAQKEELE 262
              GR + + +L    K+EL+
Sbjct: 96  WCAGRTKLQLFLHRIDKDELK 116


>Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical
           protein W08E3.2 protein.
          Length = 584

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
 Frame = -2

Query: 507 TPSKQKKNFNLPQPKMA---NTDLTRLXKSDEIRKVLRAPNKRVIRXTRKLNPLTNKQGD 337
           TP +  +  + P P+     ++D  ++ +  + R+V      +V +      P+  ++ +
Sbjct: 167 TPIQDGEEIDAPAPESTEEESSDARQVSRQQKDRRVSSTTRGKVGKSGTSRRPMKQRERE 226

Query: 336 XETQSLRGRAEEESYLRAAQKEELE 262
                 +G  EE+  +R AQK +++
Sbjct: 227 DTVDESKGEEEEDQGVRPAQKRQVK 251


>Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical
           protein W08E3.2 protein.
          Length = 584

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
 Frame = -2

Query: 507 TPSKQKKNFNLPQPKMA---NTDLTRLXKSDEIRKVLRAPNKRVIRXTRKLNPLTNKQGD 337
           TP +  +  + P P+     ++D  ++ +  + R+V      +V +      P+  ++ +
Sbjct: 167 TPIQDGEEIDAPAPESTEEESSDARQVSRQQKDRRVSSTTRGKVGKSGTSRRPMKQRERE 226

Query: 336 XETQSLRGRAEEESYLRAAQKEELE 262
                 +G  EE+  +R AQK +++
Sbjct: 227 DTVDESKGEEEEDQGVRPAQKRQVK 251


>U21320-7|AAA62533.1|  558|Caenorhabditis elegans Hypothetical
           protein K04G7.1 protein.
          Length = 558

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -3

Query: 332 KLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRRK 171
           K+N       +K  LE+R  +  + + D E SG +LS   P   A  L++RRR+
Sbjct: 360 KMNHEQQRYSQKRHLEMRTGRTTRDMRDYESSGRQLSP-TPTTTAGLLKKRRRE 412


>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
           protein F44D12.1 protein.
          Length = 1034

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = -3

Query: 548 PHSAGLTPYSG---HGRHHRNKRRTSTCPSQRWPTLTSHVXSSLMRSGRSSVLPTNA*SV 378
           P+S   TP S     G+ HR     S      +PT+     SS+M S  S  LP+ + S 
Sbjct: 540 PYSMHFTPTSSTIMEGKPHRRSAVYSPSHPPVYPTIRDDSMSSVMSSSNSIRLPSTSFSN 599

Query: 377 XHAN 366
            + N
Sbjct: 600 QYPN 603


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,206,919
Number of Sequences: 27780
Number of extensions: 224194
Number of successful extensions: 518
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)