Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_F11
         (1043 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.050
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.12 

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.5 bits (73), Expect = 0.050
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -1

Query: 584 PPPPPXXXKKXPPPPPPXXXXXXKKKXK 501
           PPPPP       PPPPP      K+K K
Sbjct: 12  PPPPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 30.7 bits (66), Expect = 0.36
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
 Frame = -1

Query: 584 PPPPPXXXK---KXPPPPPPXXXXXXKKKXKXXGG 489
           PPPPP   +   + PPPPPP      K K     G
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSG 45


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -1

Query: 584 PPPPPXXXKKXPPPPPP 534
           PPPPP      PPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 584 PPPPPXXXKKXPPPPPP 534
           PPP P      PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
 Frame = -1

Query: 611 PPXXXXXXXPPPPPXXXKKX---PPPPPP 534
           PP       PPPPP         PPPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 584 PPPPPXXXKKXPPPPPP 534
           P PPP      PPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPP 766


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,690,193
Number of Sequences: 5004
Number of extensions: 21470
Number of successful extensions: 370
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 547228964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)