Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_F09
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = -3

Query: 478 PXGGXXPPXXGGPPPXXXXXKNFXXXXP 395
           P GG  PP  G P P      N     P
Sbjct: 404 PAGGQLPPSAGAPMPPIPNMSNMSGMPP 431



 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/43 (27%), Positives = 13/43 (30%)
 Frame = +2

Query: 377 KPPPXXGGXXXKIFXXXXXGGGPPXXGGGXXPPGXGXPPPXAP 505
           +PPP  G                    GG  PP  G P P  P
Sbjct: 379 QPPPNFGVSQVSPVSMSALVSAVRSPAGGQLPPSAGAPMPPIP 421



 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = +3

Query: 438 GGPPXXGGXXPPXGXXXPPP 497
           G PP      PP G    PP
Sbjct: 37  GSPPNPSQGPPPGGPPGAPP 56


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 43  PSLRVPSFXCTXR 5
           P +R PSF CT R
Sbjct: 113 PGMRAPSFRCTER 125


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 43  PSLRVPSFXCTXR 5
           P +R PSF CT R
Sbjct: 113 PGMRAPSFRCTER 125


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 489 PPPPRRGGE 515
           PPPP RGGE
Sbjct: 377 PPPPIRGGE 385


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 126 LRQVKKKKKRPHCSSCSXGPL*ISLEG 46
           L +VKK+++     SC  GP  ++  G
Sbjct: 355 LLRVKKEEELQEAPSCGGGPTILTTPG 381



 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = -1

Query: 492  GGXPXPGGXXPPPXXGGPPPXXXXXKIFXXXPP 394
            GG P P G   P    G P        F   PP
Sbjct: 1136 GGIPGPNGIKMPSFMEGMPHLPFTPFNFWNPPP 1168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,267
Number of Sequences: 438
Number of extensions: 4766
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)