Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_F08
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 0.10
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 3.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.1
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 3.1
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 3.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.1
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 579 PPPPPPPP 556
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 578 PPPPPPPP 555
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 579 PPPPPPPP 556
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 578 PPPPPPPP 555
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Score = 25.8 bits (54), Expect(2) = 0.10
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -1
Query: 575 PPPPPPPXKXXXXXGG 528
PPPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
Score = 24.2 bits (50), Expect(2) = 0.10
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 578 PPPPPPPPXK 549
PPPPPP P K
Sbjct: 907 PPPPPPLPVK 916
Score = 23.4 bits (48), Expect(2) = 1.1
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 578 PPPPPPPP 555
P PPPPPP
Sbjct: 905 PTPPPPPP 912
Score = 23.0 bits (47), Expect(2) = 1.1
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = -1
Query: 572 PPPPPPXKXXXXXGGG 525
PPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 579 PPPPPPPP 556
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 578 PPPPPPPP 555
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 579 PPPPPPPP 556
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 578 PPPPPPPP 555
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 579 PPPPPPPP 556
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 578 PPPPPPPP 555
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 579 PPPPPPPP 556
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 578 PPPPPPPP 555
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 579 PPPPPPPP 556
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 578 PPPPPPPP 555
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 579 PPPPPPPP 556
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 578 PPPPPPPP 555
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 579 PPPPPPPP 556
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 578 PPPPPPPP 555
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 579 PPPPPPPP 556
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 578 PPPPPPPP 555
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 579 PPPPPPPP 556
PPPPPPPP
Sbjct: 775 PPPPPPPP 782
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 578 PPPPPPPP 555
PPPPPPPP
Sbjct: 775 PPPPPPPP 782
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 579 PPPPPPPP 556
PPPPPPPP
Sbjct: 776 PPPPPPPP 783
Score = 26.6 bits (56), Expect = 3.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 578 PPPPPPPP 555
PPPPPPPP
Sbjct: 776 PPPPPPPP 783
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 358 GXXPPPPPXXXGGXXPP 408
G PPPPP G PP
Sbjct: 760 GPPPPPPPPGVAGAGPP 776
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,570,068
Number of Sequences: 5004
Number of extensions: 21475
Number of successful extensions: 292
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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