Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_F05
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   4.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 471 PRGGXXPPPPXXGXKKKKKXGXXPPP 548
           P G   PPPP  G +   +    PPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +3

Query: 447 PXXXGXXPPRGGXXPPPPXXGXKKKKK 527
           P   G  PP     PPPP    K+K K
Sbjct: 13  PPPPGFEPPSQPPPPPPPGYVKKRKNK 39


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/41 (39%), Positives = 16/41 (39%)
 Frame = +3

Query: 468 PPRGGXXPPPPXXGXKKKKKXGXXPPPXXXXXXPPPXXGXG 590
           P  GG  PPPP  G       G  PPP      PPP    G
Sbjct: 756 PIMGGPPPPPPPPGV-----AGAGPPP---PPPPPPAVSAG 788


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 468 PPRGGXXPPPPXXGXKKKKKXGXXPPP 548
           PP+G   PPPP    +     G  PPP
Sbjct: 354 PPQGRSAPPPPP--PRSAPSTGRQPPP 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,586,723
Number of Sequences: 5004
Number of extensions: 24191
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)