Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_F03
         (833 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    31   0.86 
07_03_1136 + 24218601-24218734,24218769-24219906                       31   0.86 
03_01_0515 - 3864796-3865425                                           30   2.6  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   4.6  

>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = +1

Query: 553 PPPXXGXXXPPXKKKXFFFXXPGGXXXFFPPPPPXXXXXPP 675
           PPP      PP  +  F F  PG      PPPPP     PP
Sbjct: 54  PPPPPPPGPPPPHQPQFNFG-PGPPQQQQPPPPPQMYYQPP 93



 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
 Frame = +1

Query: 553 PPPXXGXXXPPXKKKXFFFXXP--GGXXXFFPPPPPXXXXXPP 675
           PPP      PP ++  +    P  G    F  PPPP     PP
Sbjct: 22  PPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPP 64


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 20/50 (40%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
 Frame = -1

Query: 698 GGXP-PXXXGGXXXXXGGGGGKKXXXPPGXXKKXIFFFXGGXXXPXXGGG 552
           GG P P   GG     GGGGG     PPG          GG   P  GGG
Sbjct: 95  GGAPGPLGGGGARPPGGGGGGGPPSLPPGAGG------GGGARPPAPGGG 138


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/49 (32%), Positives = 16/49 (32%)
 Frame = +1

Query: 553 PPPXXGXXXPPXKKKXFFFXXPGGXXXFFPPPPPXXXXXPPXXXGGXPP 699
           PPP  G   PP          P       PPPPP     PP      PP
Sbjct: 62  PPPAAGPLMPPPPPPPSVTSSPPPPP--LPPPPPPPAASPPPPPPSPPP 108


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
 Frame = +1

Query: 553 PPPXXGXXXPPXKKKXFFFXXP--GGXXXFFPPPPPXXXXXPPXXXGGXP 696
           PPP  G   PP  K       P  GG     PPPPP      P    G P
Sbjct: 347 PPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPGVP 396



 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +1

Query: 580 PPXKKKXFFFXXPGGXXXFFPPPPPXXXXXPPXXXGGXPP 699
           PP  K       P       PPPPP     PP    G PP
Sbjct: 316 PPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPP 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,274,446
Number of Sequences: 37544
Number of extensions: 326383
Number of successful extensions: 1542
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)