Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_E13
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317...    29   3.6  
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134...    29   3.6  
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365...    29   3.6  
02_01_0468 + 3357043-3357226,3357695-3358155                           29   4.8  
07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916...    28   6.4  
11_08_0092 - 28307180-28307380,28307471-28307936,28308008-283081...    28   8.4  

>07_03_1573 +
           27829967-27830338,27830821-27831510,27831594-27831781,
           27832286-27832318,27832364-27832605,27833178-27833320,
           27833649-27833825,27834104-27834256,27834639-27834694,
           27834998-27835157,27835301-27835348
          Length = 753

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +1

Query: 142 NDSPXTLTPDVRSPPRSEPG*GRG---ATAVNTTTRRRGSPQGRPA 270
           N +P    P  R+PP   PG G G    + ++   RRRG P G  A
Sbjct: 33  NPTPPPPPPRRRTPPPPPPGSGPGPQRPSYLSVALRRRGPPAGSAA 78


>07_03_1389 +
           26212117-26212119,26212721-26212875,26213402-26213479,
           26214211-26214375,26214453-26214554,26214661-26214786,
           26215454-26215490
          Length = 221

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 171 RPIPSEVRTRMR*GGYRGQHYNQTARLTPR 260
           R  PSE+R+R R  G RG+ Y+Q    +PR
Sbjct: 121 RKKPSEMRSRDRISGSRGRSYDQRYSRSPR 150


>07_03_0111 +
           13535912-13535972,13536081-13536142,13536418-13536510,
           13537577-13537649,13537876-13538265,13538337-13538404,
           13539334-13539375,13540211-13540735,13540817-13540974,
           13541078-13541636,13542438-13542500,13542579-13542680,
           13542779-13543096,13543175-13543267,13543489-13543590,
           13543678-13543782,13544190-13544323,13545097-13545280,
           13545701-13545832,13546215-13546327,13546468-13546558,
           13547138-13549339
          Length = 1889

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 151 PXTLTPDVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEA 288
           P     D  + P  EP   +  +A  T  RR GSP   PA  A +A
Sbjct: 129 PPPSPKDAAADPAKEPSGSKAGSAAATGGRRTGSPPPSPAPVAKDA 174


>02_01_0468 + 3357043-3357226,3357695-3358155
          Length = 214

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +1

Query: 397 GSGRDTPSTGRSNHSTAARXXAGXAPXGLTPSGRPLT 507
           GS    PS+  S  S +     G AP G  P G P T
Sbjct: 132 GSSASPPSSSSSPSSPSGGGGGGGAPAGQAPPGAPAT 168


>07_03_0603 -
           19890664-19890823,19891104-19891329,19891498-19891636,
           19891849-19891942,19892291-19892311,19892506-19892941,
           19893133-19893280,19893369-19893476,19893543-19893659,
           19893960-19894016,19894488-19894553,19895140-19895328,
           19895410-19895523,19895684-19895766,19895857-19896322,
           19896832-19897476
          Length = 1022

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +1

Query: 136 PLNDSPXTLTPDVRSPP--RSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEA 288
           P  D     TP+ R+PP  +S         +   TTRRR  P   P  GA  A
Sbjct: 11  PFRDLSNLRTPNPRAPPNPKSSASKEEPLPSATPTTRRRRGPPPPPRPGAATA 63


>11_08_0092 -
           28307180-28307380,28307471-28307936,28308008-28308117,
           28308206-28308493,28309024-28309059
          Length = 366

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 176 DPLRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPS 283
           D + G+ PD          QP   A P+D QP  PS
Sbjct: 188 DAVHGEQPDGERDADEHRGQPHQRAAPRDVQPPSPS 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,649,034
Number of Sequences: 37544
Number of extensions: 309125
Number of successful extensions: 968
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)