Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_E09
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   2.8  
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t...    26   4.8  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    26   4.8  
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    26   6.4  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   8.4  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   8.4  

>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +3

Query: 291 RIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPGRDA 413
           R   +E S  S   PVGPP    W P     T+TSL  + A
Sbjct: 128 RFNNAENSGHSNYYPVGPP---EWAPYTRLMTQTSLYAKSA 165


>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
           translocase complex subunit Tim23|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = -1

Query: 505 GRPEGVRPRXRATSTLARCRGVIRATGRR--CIASRPGRLVLVQRGIP---GHQRHRLG 344
           G  EG++     TST  R  G++    RR   + +  G L LV  GI    G++R + G
Sbjct: 102 GLNEGMKKTKDITSTRLRLNGILNGVTRRGPFVGNSLGVLALVYNGINSLIGYKRQKHG 160


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 425 STVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRFRAFDS 291
           STV  +P+    +    ++   +  S RPD LP   G R++ F S
Sbjct: 138 STVPTIPSVSKEANDKYFAKLGSINSQRPDDLPPSQGGRYQGFGS 182


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = +3

Query: 129 FRTHPLNDSPALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHP 260
           FR  P+ D+P L            P  VGG  R    PDG  HP
Sbjct: 294 FRNCPMADAPMLQVLEKAAQTVFVPLTVGGGIRDVSDPDGTFHP 337


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 347 QTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHST 448
           QT P++  N P+  N PA +  +TP+   +   T
Sbjct: 662 QTAPMIQPNVPVSANSPAQA--NTPAADSTKSGT 693


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 392 GSGPAGYSGTPAAPSGRPDGLPYRDGRR 309
           G  P     TP APS    G P+ +G++
Sbjct: 95  GDSPDSLVSTPTAPSANHHGNPFPNGKQ 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,708
Number of Sequences: 5004
Number of extensions: 45918
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)