Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_E07
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 102 4e-23
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi... 58 1e-09
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 31 0.16
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 31 0.21
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 29 0.48
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 29 0.48
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha... 29 0.48
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 28 1.1
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 28 1.1
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 28 1.1
SPCC1223.10c |eaf1||RNA polymerase II transcription elongation f... 27 2.0
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 27 2.6
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 27 2.6
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 26 4.5
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 26 6.0
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 25 7.9
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 25 7.9
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 25 7.9
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 25 7.9
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 25 7.9
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 7.9
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 102 bits (245), Expect = 4e-23
Identities = 47/96 (48%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Frame = -3
Query: 465 DXYAVNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFA 286
D Y+VN IAFHP +GT +T GSDG+FSFWDKD+ +LKS + +++ FN +G IFA
Sbjct: 253 DVYSVNSIAFHPQYGTFSTAGSDGTFSFWDKDSHQRLKSYPNVGGTISCSTFNRTGDIFA 312
Query: 285 YAVGYDWSKGHEHYNPNKKTFIYLR-ASYEELKARP 181
YA+ YDWSKG+ N I L +E+K RP
Sbjct: 313 YAISYDWSKGYTFNNAQLPNKIMLHPVPQDEIKPRP 348
>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
Bub3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 320
Score = 58.0 bits (134), Expect = 1e-09
Identities = 25/60 (41%), Positives = 35/60 (58%)
Frame = -3
Query: 459 YAVNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFAYA 280
Y VND+ FHP+H TLAT G DG +FWD R +L+ +++ +FN G + A A
Sbjct: 234 YPVNDLKFHPIHQTLATAGGDGVVAFWDIQVRKRLRVLNPSKINISSISFNVDGSMLAIA 293
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 31.1 bits (67), Expect = 0.16
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Frame = -3
Query: 453 VNDIAFHPVH-GTLATVGSDGSFSFWDKDART-----KLKSTELLDQSLTKCAFNHSG 298
V A++P AT DGS FW K +RT K+K L Q ++ +F+ G
Sbjct: 253 VTSCAWNPAKPDNFATAVLDGSIQFWQKGSRTKRPVMKIKDAHLPQQGISCLSFSQDG 310
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 30.7 bits (66), Expect = 0.21
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = -3
Query: 456 AVNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTK---CAFNHSGQI 292
++ I HP +AT G DG+ W +A + E ++ L K C H+G +
Sbjct: 20 SIFSIHIHPDGSRIATGGLDGTIRIWSTEAINRENENENENEDLPKQLCCMSTHTGTV 77
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 29.5 bits (63), Expect = 0.48
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 519 TTSRSSATGPRARWAAXQDXYAVNDIAFHPVH-GTLATVGSDGSFSFWD 376
T+S + P A++ D VND+ FHP H LA+V D + D
Sbjct: 218 TSSETKVISPIAKYHRHTDI--VNDVQFHPQHEALLASVSDDCTLQIHD 264
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 29.5 bits (63), Expect = 0.48
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = -3
Query: 453 VNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAF 310
V + FHP + +G W+ + +T ++S ++ D + CAF
Sbjct: 17 VKAVDFHPTEPWVIASHYNGQVGIWNYNTQTLVRSFDINDVPIRACAF 64
>SPCC16C4.08c |skb15||Shk1 kinase binding protein
15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 29.5 bits (63), Expect = 0.48
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 435 HPVHGTLATVGSDGSFSFWDKD 370
+PV L T SDGS WDKD
Sbjct: 246 YPVDDYLITASSDGSVCIWDKD 267
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -3
Query: 453 VNDIAFHPVHGTLATVGSDGSFSFWD 376
+ IA HP TVG DG WD
Sbjct: 123 ITGIAVHPSEKLALTVGGDGKLRLWD 148
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 453 VNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTEL 340
VN I +P+H LA GS FWD R+++ E+
Sbjct: 187 VNVIDINPMHQLLAFGTDAGSVEFWDPRDRSRVGILEI 224
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -3
Query: 444 IAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFAYA 280
+AF+PV L + +G WD D + + D ++ A+ +G I A A
Sbjct: 235 VAFNPVGDLLLSADVEGKIKIWDIDTMECISTQSETDGAIWAVAWYKNGFIVAGA 289
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 456 AVNDIAFHPVHGTLATVGSDGSFSFW 379
AVN + F+P LAT G +G+ W
Sbjct: 69 AVNVVRFNPEGNILATAGDEGTIMLW 94
>SPCC1223.10c |eaf1||RNA polymerase II transcription elongation
factor SpEAF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 251
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = -1
Query: 233 RRRSFTCEHLTKNSKRVRHNNPTIDSSTPGRSPQPTDNAQ 114
+ ++FT EH+ + ++ NP + + P + +DN+Q
Sbjct: 86 KTKTFTLEHIDEIARLNALRNPKVSKTVPSNAITQSDNSQ 125
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/74 (25%), Positives = 30/74 (40%)
Frame = -3
Query: 444 IAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFAYAVGYDW 265
+AFHP + T +G WD T L + D + AF+ + +F + G D+
Sbjct: 17 VAFHPTQPWILTSLHNGRIQLWDYRMGTLLDRFDGHDGPVRGIAFHPTQPLFV-SGGDDY 75
Query: 264 SKGHEHYNPNKKTF 223
+Y K F
Sbjct: 76 KVNVWNYKSRKLLF 89
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -3
Query: 453 VNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNH 304
V IAFHP + G D + W+ +R L S + C F+H
Sbjct: 56 VRGIAFHPTQPLFVSGGDDYKVNVWNYKSRKLLFSLCGHMDYVRVCTFHH 105
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -3
Query: 453 VNDIAFHPVHGTLATVGSDGSFSFWDKDART-KLKST 346
V D+AF P T DGS W+ T +LK T
Sbjct: 167 VRDVAFSPNDSKFVTASDDGSLKVWNFHMSTEELKLT 203
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 453 VNDIAFHPVHGTLATVGSDGSFSFWD 376
V + +HP G LA+ D FWD
Sbjct: 209 VKTVDWHPSKGLLASGSKDNLVKFWD 234
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -3
Query: 453 VNDIAFHPVHGTLATVGSDGSFSFW 379
+N +AFHP +A D S W
Sbjct: 341 INSLAFHPGSNVIALASKDTRISLW 365
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -3
Query: 453 VNDIAFHPVHGTLATVGSDGSFSFWD 376
VND+ HP G L + G WD
Sbjct: 127 VNDLLIHPNQGELLSCDQSGRVRAWD 152
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = -3
Query: 456 AVNDIAFHPVHGTLATVGSDGSFSFWDKDARTKLK 352
A+ +AF + +ATV D WD K++
Sbjct: 64 AIRQVAFSKDYSRMATVSEDKCLRLWDSTQPDKIE 98
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 453 VNDIAFHPVHGTLATVGSDGSFSFWD 376
V+ ++FHP LAT SD + WD
Sbjct: 490 VDCVSFHPNAAYLATGSSDHTTRMWD 515
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -3
Query: 465 DXYAVNDIAFHPVHGTLATVGSDGSFSF 382
D VND+ +HP H L +D +F
Sbjct: 231 DDSPVNDVEYHPHHTNLYIAVNDNGIAF 258
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -1
Query: 290 LPTRSGMTGLRVTSTTTPIRRRSFTCEH--LTKNSKRVRHNNPTIDSSTPGRSPQPTDNA 117
LP + V +T I T + LT +S+ + H N +I + +PQ T+
Sbjct: 58 LPYTHSFSNASVYTTLITITNSQCTGNYSTLTISSQPLIHTNTSISKPSQTATPQNTNTT 117
Query: 116 QCTALGMSTTD 84
Q + +TT+
Sbjct: 118 QVSLTNGTTTN 128
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -3
Query: 444 IAFHPVHGTLATVGSDGSFSFWDKDARTKLKSTELLDQSLTKCAFNHSGQIFA 286
I F P + LA G+D S WD +S +D + +F++ + A
Sbjct: 200 IEFSPDNRHLAIGGADAITSLWDPQELICERSITRMDYPIRTLSFSYDSRYLA 252
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 7.9
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = -1
Query: 290 LPTRSGMTGLRVTSTTTPIRRRSFTCEHLTKNSKRVRHNNPTIDSSTPGRSPQPTDNAQC 111
L + + +T V +T+TPI S S V + + I SST S P ++
Sbjct: 2658 LNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSS-- 2715
Query: 110 TALGMST 90
TAL ST
Sbjct: 2716 TALNTST 2722
Score = 25.4 bits (53), Expect = 7.9
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = -1
Query: 290 LPTRSGMTGLRVTSTTTPIRRRSFTCEHLTKNSKRVRHNNPTIDSSTPGRSPQPTDNAQC 111
L + + +T V +T+TPI S S V + + I SST S P ++
Sbjct: 2886 LNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSS-- 2943
Query: 110 TALGMST 90
TAL ST
Sbjct: 2944 TALNTST 2950
Score = 25.4 bits (53), Expect = 7.9
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = -1
Query: 290 LPTRSGMTGLRVTSTTTPIRRRSFTCEHLTKNSKRVRHNNPTIDSSTPGRSPQPTDNAQC 111
L + + +T V +T+TPI S S V + + I SST S P ++
Sbjct: 2982 LNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSS-- 3039
Query: 110 TALGMST 90
TAL ST
Sbjct: 3040 TALNTST 3046
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,570
Number of Sequences: 5004
Number of extensions: 32684
Number of successful extensions: 213
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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