Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_E02
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    38   0.001
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    38   0.001
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    23   5.7  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 27/82 (32%), Positives = 32/82 (39%)
 Frame = -3

Query: 379 PPXGXXGXXXPXXXXPXXXFSQPPPLPKXWGFPLTPNFALIYPKGVFGXGXXXXXXXXGV 200
           PP    G             S    + + W   L   F L+Y K  F           G 
Sbjct: 363 PPQHVPGSGIAKVNRAVCMLSNTTSIAEAWS-RLDHKFDLMYSKRAFVHWYVGEGMEEGE 421

Query: 199 FPKPXEXLAALEKDYEEVGMDS 134
           F +  E LAALE+DYEEVG DS
Sbjct: 422 FSEAREDLAALERDYEEVGQDS 443


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 27/82 (32%), Positives = 32/82 (39%)
 Frame = -3

Query: 379 PPXGXXGXXXPXXXXPXXXFSQPPPLPKXWGFPLTPNFALIYPKGVFGXGXXXXXXXXGV 200
           PP    G             S    + + W   L   F L+Y K  F           G 
Sbjct: 359 PPQHIEGSEIAKVDRAVCMLSNTTSIAEAWS-RLDHKFDLMYSKRAFVHWYVGEGMEEGE 417

Query: 199 FPKPXEXLAALEKDYEEVGMDS 134
           F +  E LAALE+DYEEVG DS
Sbjct: 418 FSEAREDLAALERDYEEVGQDS 439


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 22.6 bits (46), Expect(2) = 5.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -1

Query: 417  APPXXRGXXKXPPPP 373
            APP   G    PPPP
Sbjct: 1720 APPMPAGPPSAPPPP 1734



 Score = 21.4 bits (43), Expect(2) = 5.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -1

Query: 567  PPPPXGGXXPPP 532
            PPPP     PPP
Sbjct: 1707 PPPPPMSVPPPP 1718


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,628,713
Number of Sequences: 5004
Number of extensions: 25929
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)