Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_D23
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   134   2e-32
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   131   1e-31
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    39   7e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.3  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.2  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   6.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.9  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  134 bits (323), Expect = 2e-32
 Identities = 63/100 (63%), Positives = 75/100 (75%)
 Frame = -1

Query: 626 PCXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 447
           P  ++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LL
Sbjct: 121 PRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLL 180

Query: 446 AREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 327
           AREVLR+RG L R   WDV+ DL+FYRDPEE E++E+  K
Sbjct: 181 AREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 17/29 (58%), Positives = 19/29 (65%)
 Frame = -2

Query: 712 FAAHTGVTLIAXLFTPGVFINQIQXAFRD 626
           FAAHTG T IA  FTPG F N I   +R+
Sbjct: 92  FAAHTGATAIAGRFTPGNFTNYITRTYRE 120


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  131 bits (316), Expect = 1e-31
 Identities = 62/98 (63%), Positives = 74/98 (75%)
 Frame = -1

Query: 626 PCXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 447
           P  +IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LL
Sbjct: 122 PRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLL 181

Query: 446 AREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 333
           AREVLRLRG + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 182 AREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219



 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -2

Query: 769 ETPXXVXIXSG-PWSXX-LXXFAAHTGVTLIAXLFTPGVFINQIQXAFRD 626
           E P  V + S  P+    +  FAAHTG T IA  FTPG F N I   +R+
Sbjct: 72  ENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYRE 121


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = -1

Query: 626 PCXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 447
           P  +++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 446 AR 441
           +R
Sbjct: 240 SR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 578 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 468
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 470 IGLMWWLLAREVLRLRGVLPRDQRWD 393
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 415 FPVTSAGML--WLICSSTVTLKKVKRM 341
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -2

Query: 646 IQXAFRDLVX*LYWTLHKTINPLLKLHMSTFL*LLCATQTP-H*DLWTLLSHATPSLPTL 470
           ++  FR +    + +L+K + PLL   +  F  LL + +TP   DL+T L    P   +L
Sbjct: 721 LRALFRGIGGGRFESLYKEVMPLLHALLEAFNSLLISARTPKEKDLFTELCLTIPVRLSL 780

Query: 469 LV 464
           L+
Sbjct: 781 LL 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,048
Number of Sequences: 5004
Number of extensions: 51678
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)