Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_D22
(1281 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 35 0.11
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 35 0.11
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 0.25
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 0.25
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 0.26
Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical pr... 33 0.58
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 33 0.58
Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical pr... 32 0.76
X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2 prot... 32 0.76
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 2.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 2.3
AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (... 31 2.3
AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical... 31 2.3
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 27 2.7
Z69903-1|CAA93772.1| 137|Caenorhabditis elegans Hypothetical pr... 30 4.1
AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical ... 27 4.6
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 29 5.4
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 29 5.4
AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical ... 29 5.4
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 29 5.4
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 7.1
AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like ... 29 7.1
AF016446-2|AAC24165.1| 70|Caenorhabditis elegans Hypothetical ... 29 7.1
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 9.4
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 29 9.4
Z49130-7|CAA88972.2| 316|Caenorhabditis elegans Hypothetical pr... 29 9.4
AF068713-16|AAD34663.1| 156|Caenorhabditis elegans Ground-like ... 29 9.4
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 35.1 bits (77), Expect = 0.11
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +1
Query: 439 GGXFXXPGGGGGGGXXXXPPPPQXXXKKXG 528
GG PGGGGGGG P PP+ K G
Sbjct: 625 GGPPRGPGGGGGGGPTGPPAPPKPPAKPRG 654
Score = 31.9 bits (69), Expect = 1.0
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 438 GGVXXXPGGGGGGGXXXXXPPPPXXXKKXG 527
GG PGGGGGGG PP K G
Sbjct: 625 GGPPRGPGGGGGGGPTGPPAPPKPPAKPRG 654
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 35.1 bits (77), Expect = 0.11
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +1
Query: 439 GGXFXXPGGGGGGGXXXXPPPPQXXXKKXG 528
GG PGGGGGGG P PP+ K G
Sbjct: 625 GGPPRGPGGGGGGGPTGPPAPPKPPAKPRG 654
Score = 31.9 bits (69), Expect = 1.0
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 438 GGVXXXPGGGGGGGXXXXXPPPPXXXKKXG 527
GG PGGGGGGG PP K G
Sbjct: 625 GGPPRGPGGGGGGGPTGPPAPPKPPAKPRG 654
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 3.1
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 497 GGXXXXPPPPPPPGXXXNPP 438
GG PPPPPP G PP
Sbjct: 766 GGCPPPPPPPPPGGFKGGPP 785
Score = 29.9 bits (64), Expect(2) = 0.25
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 479 PPPPPPPGXXXNPP 438
PPPPPPPG PP
Sbjct: 759 PPPPPPPGGCPPPP 772
Score = 29.5 bits (63), Expect = 5.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 497 GGXXXXPPPPPPPG 456
GG PPPPPPPG
Sbjct: 778 GGFKGGPPPPPPPG 791
Score = 22.6 bits (46), Expect(2) = 0.25
Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 4/18 (22%)
Frame = -2
Query: 497 GGXXXXPP----PPPPPG 456
GG PP PPPPPG
Sbjct: 701 GGSSALPPITGGPPPPPG 718
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 3.1
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 497 GGXXXXPPPPPPPGXXXNPP 438
GG PPPPPP G PP
Sbjct: 766 GGCPPPPPPPPPGGFKGGPP 785
Score = 29.9 bits (64), Expect(2) = 0.25
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 479 PPPPPPPGXXXNPP 438
PPPPPPPG PP
Sbjct: 759 PPPPPPPGGCPPPP 772
Score = 29.5 bits (63), Expect = 5.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 497 GGXXXXPPPPPPPG 456
GG PPPPPPPG
Sbjct: 778 GGFKGGPPPPPPPG 791
Score = 22.6 bits (46), Expect(2) = 0.25
Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 4/18 (22%)
Frame = -2
Query: 497 GGXXXXPP----PPPPPG 456
GG PP PPPPPG
Sbjct: 701 GGSSALPPITGGPPPPPG 718
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 3.1
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 497 GGXXXXPPPPPPPGXXXNPP 438
GG PPPPPP G PP
Sbjct: 349 GGCPPPPPPPPPGGFKGGPP 368
Score = 29.9 bits (64), Expect(2) = 0.26
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 479 PPPPPPPGXXXNPP 438
PPPPPPPG PP
Sbjct: 342 PPPPPPPGGCPPPP 355
Score = 29.5 bits (63), Expect = 5.4
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 497 GGXXXXPPPPPPPG 456
GG PPPPPPPG
Sbjct: 361 GGFKGGPPPPPPPG 374
Score = 22.6 bits (46), Expect(2) = 0.26
Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 4/18 (22%)
Frame = -2
Query: 497 GGXXXXPP----PPPPPG 456
GG PP PPPPPG
Sbjct: 284 GGSSALPPITGGPPPPPG 301
>Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical
protein F53F1.4 protein.
Length = 105
Score = 32.7 bits (71), Expect = 0.58
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -2
Query: 521 FFXXXWGGGGXXXXPPPPPPPGXXXNP 441
F GGGG PPPPPPP P
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPPCGCGGP 43
Score = 29.1 bits (62), Expect = 7.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 448 FXXPGGGGGGGXXXXPPPP 504
F P GGGGG PPPP
Sbjct: 17 FLLPSGGGGGCGCAPPPPP 35
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 32.7 bits (71), Expect = 0.58
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 439 GGXFXXPGGGGGGGXXXXPPPP 504
GG GGGGGGG PPPP
Sbjct: 24 GGGGGYSGGGGGGGDAAPPPPP 45
Score = 32.3 bits (70), Expect = 0.76
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +3
Query: 438 GGVXXXPGGGGGGGXXXXXPPPP 506
GG GGGGGGG PPPP
Sbjct: 24 GGGGGYSGGGGGGGDAAPPPPPP 46
Score = 29.1 bits (62), Expect = 7.1
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 503 GGGGXXXXPPPPPPPGXXXNPP 438
GGGG PPPPPP P
Sbjct: 32 GGGGGGDAAPPPPPPADAAPAP 53
>Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical
protein F53F1.5 protein.
Length = 215
Score = 32.3 bits (70), Expect = 0.76
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 521 FFXXXWGGGGXXXXPPPPPPP 459
F GGGG PPPPPPP
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPP 37
Score = 29.1 bits (62), Expect = 7.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 448 FXXPGGGGGGGXXXXPPPP 504
F P GGGGG PPPP
Sbjct: 17 FLLPSGGGGGCGCAPPPPP 35
Score = 29.1 bits (62), Expect = 7.1
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 503 GGGGXXXXPPPPPPPGXXXNPP 438
GGGG PPPPPP P
Sbjct: 22 GGGGGCGCAPPPPPPPCGCGAP 43
>X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2
protein.
Length = 231
Score = 32.3 bits (70), Expect = 0.76
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 521 FFXXXWGGGGXXXXPPPPPPP 459
F GGGG PPPPPPP
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPP 37
Score = 29.1 bits (62), Expect = 7.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 448 FXXPGGGGGGGXXXXPPPP 504
F P GGGGG PPPP
Sbjct: 17 FLLPSGGGGGCGCAPPPPP 35
Score = 29.1 bits (62), Expect = 7.1
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 503 GGGGXXXXPPPPPPPGXXXNPP 438
GGGG PPPPPP P
Sbjct: 22 GGGGGCGCAPPPPPPPCGCGAP 43
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 2.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 479 PPPPPPPGXXXNPP 438
PPPPPPPG PP
Sbjct: 298 PPPPPPPGRTPGPP 311
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 2.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 479 PPPPPPPGXXXNPP 438
PPPPPPPG PP
Sbjct: 308 PPPPPPPGRTPGPP 321
>AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (grd
related) protein19 protein.
Length = 157
Score = 30.7 bits (66), Expect = 2.3
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 460 GGGGGGGXXXXPPPP 504
GGGGGGG PPPP
Sbjct: 34 GGGGGGGGCCAPPPP 48
Score = 30.7 bits (66), Expect = 2.3
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 460 GGGGGGGXXXXPPPP 504
GGGGGGG PPPP
Sbjct: 35 GGGGGGGCCAPPPPP 49
Score = 30.3 bits (65), Expect = 3.1
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 459 GGGGGGGXXXXXPPPP 506
GGGGGGG PPPP
Sbjct: 35 GGGGGGGCCAPPPPPP 50
Score = 29.1 bits (62), Expect = 7.1
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 503 GGGGXXXXPPPPPP 462
GGGG PPPPPP
Sbjct: 37 GGGGGCCAPPPPPP 50
Score = 28.7 bits (61), Expect = 9.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 503 GGGGXXXXPPPPPPP 459
GGGG PPPPPP
Sbjct: 36 GGGGGGCCAPPPPPP 50
>AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical
protein Y47D7A.13 protein.
Length = 311
Score = 30.7 bits (66), Expect = 2.3
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 518 FXXXWGGGGXXXXPPPPPPPG 456
F GGGG PPPPPP G
Sbjct: 18 FNLLGGGGGGCCAPPPPPPCG 38
Score = 29.1 bits (62), Expect = 7.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 521 FFXXXWGGGGXXXXPPPPPPP 459
F GGGG PPPPPP
Sbjct: 16 FLFNLLGGGGGGCCAPPPPPP 36
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 27.5 bits (58), Expect(2) = 2.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -2
Query: 479 PPPPPPPGXXXNPP 438
PPPPPPP PP
Sbjct: 138 PPPPPPPRVPRTPP 151
Score = 21.4 bits (43), Expect(2) = 2.7
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -2
Query: 497 GGXXXXPPPPP 465
GG PPPPP
Sbjct: 134 GGSSPPPPPPP 144
>Z69903-1|CAA93772.1| 137|Caenorhabditis elegans Hypothetical
protein F46F2.3 protein.
Length = 137
Score = 29.9 bits (64), Expect = 4.1
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 503 GGGGXXXXPPPPPPPGXXXNPP 438
GGGG PPPPPP + P
Sbjct: 108 GGGGAYAQAPPPPPPSSYASGP 129
>AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical
protein Y56A3A.6 protein.
Length = 798
Score = 26.6 bits (56), Expect(2) = 4.6
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -2
Query: 479 PPPPPPPGXXXNPP 438
PPPPPPP PP
Sbjct: 755 PPPPPPPPLAAAPP 768
Score = 21.4 bits (43), Expect(2) = 4.6
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = -2
Query: 497 GGXXXXPPPPPPP 459
G PPPPPP
Sbjct: 747 GNRPSSTPPPPPP 759
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 29.5 bits (63), Expect = 5.4
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 521 FFXXXWGGGGXXXXPPPPPP 462
F GGGG PPPPPP
Sbjct: 17 FLLPSGGGGGCGCAPPPPPP 36
Score = 29.1 bits (62), Expect = 7.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 448 FXXPGGGGGGGXXXXPPPP 504
F P GGGGG PPPP
Sbjct: 17 FLLPSGGGGGCGCAPPPPP 35
Score = 28.7 bits (61), Expect = 9.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 503 GGGGXXXXPPPPPPP 459
GGGG PPPPPP
Sbjct: 22 GGGGGCGCAPPPPPP 36
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 29.5 bits (63), Expect = 5.4
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 479 PPPPPPPGXXXNPPXXXLG 423
PPPPPPP PP LG
Sbjct: 87 PPPPPPPTLKAPPPPPILG 105
>AF016446-1|AAC24166.1| 66|Caenorhabditis elegans Hypothetical
protein C02E7.7 protein.
Length = 66
Score = 29.5 bits (63), Expect = 5.4
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 521 FFXXXWGGGGXXXXPPPPPP 462
F GGGG PPPPPP
Sbjct: 17 FLFPSGGGGGCGCAPPPPPP 36
Score = 29.1 bits (62), Expect = 7.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 448 FXXPGGGGGGGXXXXPPPP 504
F P GGGGG PPPP
Sbjct: 17 FLFPSGGGGGCGCAPPPPP 35
Score = 28.7 bits (61), Expect = 9.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 503 GGGGXXXXPPPPPPP 459
GGGG PPPPPP
Sbjct: 22 GGGGGCGCAPPPPPP 36
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 29.5 bits (63), Expect = 5.4
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +3
Query: 423 PQXXXGGVXXXPGGGGGGGXXXXXPPPP 506
P GG+ G GG GG PPPP
Sbjct: 188 PGGGGGGMGGGGGSGGSGGGSGRFPPPP 215
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.1 bits (62), Expect = 7.1
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 688 GGXXPPPXFFXXPPPP 641
GG PPP F PPPP
Sbjct: 102 GGIPPPPPMFGAPPPP 117
>AF068713-14|AAK73895.1| 172|Caenorhabditis elegans Ground-like
(grd related) protein29 protein.
Length = 172
Score = 29.1 bits (62), Expect = 7.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 506 WGGGGXXXXPPPPPPP 459
+GGG PPPPPPP
Sbjct: 57 YGGGYGCGIPPPPPPP 72
>AF016446-2|AAC24165.1| 70|Caenorhabditis elegans Hypothetical
protein C02E7.6 protein.
Length = 70
Score = 29.1 bits (62), Expect = 7.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 448 FXXPGGGGGGGXXXXPPPP 504
F P GGGGG PPPP
Sbjct: 17 FLFPSGGGGGCGCAPPPPP 35
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.7 bits (61), Expect = 9.4
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +3
Query: 438 GGVXXXPGGGGGGGXXXXXPPPPXXXKKXGXFFXGXG 548
GG GGGG GG PPPP G G G
Sbjct: 37 GGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCG 73
Score = 28.7 bits (61), Expect = 9.4
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +3
Query: 438 GGVXXXPGGGGGGGXXXXXPPPPXXXKKXGXFFXGXG 548
GG GGGG GG PPPP G G G
Sbjct: 94 GGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCG 130
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 28.7 bits (61), Expect = 9.4
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 497 GGXXXXPPPPPPPGXXXNP 441
GG PPPPPPP P
Sbjct: 48 GGGYEAPPPPPPPSYAGGP 66
>Z49130-7|CAA88972.2| 316|Caenorhabditis elegans Hypothetical
protein T06D8.9 protein.
Length = 316
Score = 28.7 bits (61), Expect = 9.4
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +1
Query: 439 GGXFXXPGGGGGGGXXXXPPPPQXXXKKXGFFFXG 543
GG GGGG GG PPP K + F G
Sbjct: 190 GGPGSGGGGGGPGGYPSAPPPYDDYSKPPPYGFRG 224
>AF068713-16|AAD34663.1| 156|Caenorhabditis elegans Ground-like
(grd related) protein31 protein.
Length = 156
Score = 28.7 bits (61), Expect = 9.4
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 439 GGXFXXPGGGGGGGXXXXPPPP 504
GG GGG GGG PPPP
Sbjct: 30 GGGCGGCGGGCGGGCGCAPPPP 51
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,229,976
Number of Sequences: 27780
Number of extensions: 233571
Number of successful extensions: 3726
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2652
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3579019094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -