Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_D19
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p...   151   1e-37
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...   113   2e-26
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    29   0.89 
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    27   3.6  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   8.3  

>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 289

 Score =  151 bits (365), Expect = 1e-37
 Identities = 72/129 (55%), Positives = 88/129 (68%)
 Frame = -2

Query: 628 EIGGXVXSXGXVYPVKILGTXAXXDEGETDWKXIAIDSRDPNAEKLNDVQDVEALFXGLL 449
           EIG      G V  VK+LG  A  DEGETDWK I ID  DP A KLND++DVE    GL+
Sbjct: 125 EIGEARGYTGQVKQVKVLGVMALLDEGETDWKVIVIDVNDPLAPKLNDIEDVERHMPGLI 184

Query: 448 RATVEWFRLYKVPDGKPVNKFAFDGEAKNAEFAYKVVDEVHEFWKSLISGNVPDATDINK 269
           RAT EWFR+YK+PDGKP N FAF GE KN ++A +VV E +E W+ LI+G     +D + 
Sbjct: 185 RATNEWFRIYKIPDGKPENSFAFSGECKNRKYAEEVVRECNEAWERLITGKTDAKSDFSL 244

Query: 268 MNVSVSGSV 242
           +NVSV+GSV
Sbjct: 245 VNVSVTGSV 253


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score =  113 bits (272), Expect = 2e-26
 Identities = 49/105 (46%), Positives = 65/105 (61%)
 Frame = -2

Query: 628 EIGGXVXSXGXVYPVKILGTXAXXDEGETDWKXIAIDSRDPNAEKLNDVQDVEALFXGLL 449
           EIGG +   G +  VK+LG     D+GETDWK +AID  DP A+ LND+ DV+ L   LL
Sbjct: 130 EIGGSIGYIGQIKQVKVLGALGLIDQGETDWKILAIDINDPRAKLLNDISDVQNLMPRLL 189

Query: 448 RATVEWFRLYKVPDGKPVNKFAFDGEAKNAEFAYKVVDEVHEFWK 314
             T +WF +YK+PDGKP N+F FDG       A  ++ + H+ WK
Sbjct: 190 PCTRDWFAIYKIPDGKPKNRFFFDGNYLPKSDALDIIAQCHQHWK 234


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 415 VPDGKPVNKFAFDGEAKN 362
           +PDGKP+NK A+  E +N
Sbjct: 505 IPDGKPLNKIAWQPEKRN 522


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 361 AEFAYKVVDEVHEFWKSLISGNVPDATD 278
           A+F YK++D     W SL+   +P+ TD
Sbjct: 35  AKFVYKLLDYTKGNWLSLLLRFLPETTD 62


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 376 GEAKNAEFAYKVVDEVHEFWKSLIS 302
           GE   ++ + K+ D++H F+KSL S
Sbjct: 407 GEELASQISSKIYDDLHAFYKSLNS 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,726
Number of Sequences: 5004
Number of extensions: 36335
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)