Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_D18
(977 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 39 0.001
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 36 0.011
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.028
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 33 0.061
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 32 0.11
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.43
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 0.75
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 23 1.5
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 5.3
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 5.3
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 27 5.3
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 39.1 bits (87), Expect = 0.001
Identities = 17/31 (54%), Positives = 17/31 (54%)
Frame = -3
Query: 684 PPPPPPPPXXXGGGGGGGXXFFXPXPPPPPP 592
PPPPPPPP G G P PPPPPP
Sbjct: 761 PPPPPPPPGVAGAG--------PPPPPPPPP 783
Score = 36.7 bits (81), Expect = 0.005
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = -3
Query: 720 PPXXXXXXXXXPPPPPPPPPXXXGGGGGGGXXFFXPXPPPPP 595
PP PPPPPPPPP GG ++ P P P
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAV----SAGGSRYYAPAPQAEP 801
Score = 32.3 bits (70), Expect = 0.11
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = -3
Query: 735 KKXXXPPXXXXXXXXXPPPPPPPPPXXXGGGGGGGXXFFXPXPPPPPP 592
K PP P P P PPP GG P PPPPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGG---------PPPPPPPP 768
Score = 27.5 bits (58), Expect = 3.0
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 632 PPPPPPPXXXGGGG 673
PPPPPPP G G
Sbjct: 761 PPPPPPPPGVAGAG 774
Score = 27.5 bits (58), Expect = 3.0
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 632 PPPPPPPXXXGGGG 673
PPPPPPP GG
Sbjct: 776 PPPPPPPPAVSAGG 789
Score = 26.2 bits (55), Expect = 7.0
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 632 PPPPPPPXXXGGGGG 676
PPPPPPP GG
Sbjct: 775 PPPPPPPPPAVSAGG 789
Score = 23.4 bits (48), Expect(2) = 6.2
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +2
Query: 635 PPPPPPXXXGGGGGG 679
PPPPPP GG
Sbjct: 775 PPPPPPPPPAVSAGG 789
Score = 23.0 bits (47), Expect(2) = 8.0
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +2
Query: 638 PPPPPXXXGGGGGG 679
PPPPP G G G
Sbjct: 761 PPPPPPPPGVAGAG 774
Score = 21.0 bits (42), Expect(2) = 6.2
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +2
Query: 632 PPPPPP 649
PPPPPP
Sbjct: 732 PPPPPP 737
Score = 21.0 bits (42), Expect(2) = 8.0
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +2
Query: 635 PPPPPP 652
PPPPPP
Sbjct: 732 PPPPPP 737
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.5 bits (78), Expect = 0.011
Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = -3
Query: 687 PPPPPPPPPXXXGGG--GGGGXXFFXPXPPPPP 595
PPPPPPP G G G P PPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 34.7 bits (76), Expect = 0.020
Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Frame = -3
Query: 681 PPPPPPPXXXGGG----GGGGXXFFXPXPPPPPP 592
PPPPPPP G G G P PPPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLP-PPPPPP 343
Score = 33.5 bits (73), Expect = 0.046
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -3
Query: 681 PPPPPPPXXXGGGGGGGXXFFXPXPPPPPP 592
PPPPPPP G PPPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 30.3 bits (65), Expect = 0.43
Identities = 15/48 (31%), Positives = 17/48 (35%)
Frame = -3
Query: 738 KKKXXXPPXXXXXXXXXPPPPPPPPPXXXGGGGGGGXXFFXPXPPPPP 595
++ PP PPPPPPP G PPPPP
Sbjct: 319 RRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = +2
Query: 605 GGXGXKKXXPPPPPPPXXXGGG 670
G PPPPPPP G
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAG 349
Score = 24.6 bits (51), Expect(2) = 1.5
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -3
Query: 678 PPPPPPXXXGGGGGGGXXFFXPXPPPPPP 592
PP PPP P PPPPPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRP-PPPPPP 317
Score = 23.0 bits (47), Expect(2) = 6.8
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = -3
Query: 681 PPPPPPPXXXGGGGGGGXXFFXPXPPPPPP 592
PP PPP PPPPPP
Sbjct: 290 PPLPPPSSRVSAAALAANK---KRPPPPPP 316
Score = 22.2 bits (45), Expect(2) = 1.5
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 687 PPPPPPPPP 661
P PPP PPP
Sbjct: 251 PAPPPIPPP 259
Score = 21.4 bits (43), Expect(2) = 6.8
Identities = 8/19 (42%), Positives = 8/19 (42%)
Frame = -3
Query: 720 PPXXXXXXXXXPPPPPPPP 664
PP PPP PPP
Sbjct: 241 PPERVPSLSAPAPPPIPPP 259
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.5 bits (63), Expect(2) = 0.028
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3
Query: 687 PPPPPPPPP 661
PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197
Score = 29.5 bits (63), Expect = 0.75
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 686 PPPPPPPPP 660
PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = -3
Query: 684 PPPPPPPPXXXGGGGGGGXXFFXPXPPPPPP 592
PPP PP + P PPPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197
Score = 26.2 bits (55), Expect = 7.0
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 687 PPPPPPPPP 661
P PPPPPPP
Sbjct: 236 PAPPPPPPP 244
Score = 26.2 bits (55), Expect = 7.0
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -1
Query: 686 PPPPPPPPP 660
P PPPPPPP
Sbjct: 236 PAPPPPPPP 244
Score = 24.2 bits (50), Expect(2) = 3.8
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -3
Query: 720 PPXXXXXXXXXPPPPPPPPP 661
PP P PPPPPP
Sbjct: 224 PPTYTPKQADPLPAPPPPPP 243
Score = 23.4 bits (48), Expect(2) = 0.028
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3
Query: 615 PXPPPPPP 592
P PPPPPP
Sbjct: 236 PAPPPPPP 243
Score = 21.0 bits (42), Expect(2) = 3.8
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -3
Query: 609 PPPPPP 592
PPPPPP
Sbjct: 239 PPPPPP 244
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 33.1 bits (72), Expect = 0.061
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 687 PPPPPPPPPXXXGGGG 640
PPPPPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
Score = 33.1 bits (72), Expect = 0.061
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 686 PPPPPPPPPXXXGGGG 639
PPPPPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
Score = 27.5 bits (58), Expect = 3.0
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 632 PPPPPPPXXXGGGGG 676
PPPPPPP GG
Sbjct: 946 PPPPPPPPLVSAAGG 960
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 614 GXKKXXPPPPPPPXXXGGGGGG 679
G PPPPPPP GG
Sbjct: 939 GVMPAFPPPPPPPPPLVSAAGG 960
Score = 26.2 bits (55), Expect(2) = 0.22
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -3
Query: 681 PPPPPPPXXXGGGGGG 634
PPPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
Score = 25.4 bits (53), Expect(2) = 0.37
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 621 FXPXPPPPPP 592
F P PPPPPP
Sbjct: 944 FPPPPPPPPP 953
Score = 23.4 bits (48), Expect(2) = 0.22
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3
Query: 687 PPPPPPPP 664
P PPPPPP
Sbjct: 905 PTPPPPPP 912
Score = 23.4 bits (48), Expect(2) = 0.37
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3
Query: 684 PPPPPPPP 661
P PPPPPP
Sbjct: 905 PTPPPPPP 912
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 32.3 bits (70), Expect = 0.11
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +2
Query: 593 GGGGGGXGXKKXXPPPPPPPXXXGGGGGGGGGXXXXKXXXXGGXXFF 733
GGG GG G PPP P GG GG G GG F
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGF 233
Score = 26.6 bits (56), Expect = 5.3
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +1
Query: 595 GGGGGGXXKKXXXPXPPPPXXXGGGGGGGGGXXXXXXXXXGG 720
G GGG PPP G GG GG G GG
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGG 225
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.3 bits (65), Expect = 0.43
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -3
Query: 687 PPPPPPPPPXXXGGGGGGGXXFFXPXPPPPPP 592
PP PPPPP G F P PPPPP
Sbjct: 5 PPGNPPPPPPPPG--------FEPPSQPPPPP 28
Score = 29.9 bits (64), Expect = 0.57
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -3
Query: 687 PPPPPPPPPXXXGGGGGGGXXFFXPXPPPPP 595
PPPPPPPP G P PPPPP
Sbjct: 9 PPPPPPPP---------GFEPPSQPPPPPPP 30
Score = 29.9 bits (64), Expect = 0.57
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -3
Query: 684 PPPPPPPPXXXGGGGGGGXXFFXPXPPPPPP 592
PPPPPPPP G PPPPPP
Sbjct: 9 PPPPPPPP---------GFEPPSQPPPPPPP 30
Score = 28.7 bits (61), Expect = 1.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 719 PPXXXFXXXXXPPPPPPP 666
PP F PPPPPPP
Sbjct: 13 PPPPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/22 (50%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Frame = -3
Query: 720 PPXXXXXXXXXPP--PPPPPPP 661
PP PP PPPPPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 29.5 bits (63), Expect = 0.75
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3
Query: 687 PPPPPPPPP 661
PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314
Score = 29.5 bits (63), Expect = 0.75
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 686 PPPPPPPPP 660
PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 23.4 bits (48), Expect(2) = 1.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 686 PPPPPPPP 663
P PPPPPP
Sbjct: 3 PAPPPPPP 10
Score = 23.4 bits (48), Expect(2) = 1.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1
Query: 683 PPPPPPPP 660
PPPPPP P
Sbjct: 5 PPPPPPAP 12
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 5.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 687 PPPPPPPP 664
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 5.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 685 PPPPPPPP 662
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 5.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 683 PPPPPPPP 660
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 5.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 687 PPPPPPPP 664
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 5.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 685 PPPPPPPP 662
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 5.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 683 PPPPPPPP 660
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 641 PPPPXXXGGGGGGGGG 688
PPPP GG G G GG
Sbjct: 76 PPPPGAEGGPGAGFGG 91
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,624,206
Number of Sequences: 5004
Number of extensions: 26378
Number of successful extensions: 637
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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