Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_D17
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    30   2.3  
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148...    30   2.3  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    29   4.0  

>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/59 (28%), Positives = 17/59 (28%)
 Frame = -2

Query: 752 PXGPXPXXPXXGGXPGXXXXXXPXXXXPPXXPXTPRXPXXXXXXPXXXXPXPXXPXXXP 576
           P  P P  P  GG P       P    PP  P     P      P    P P  P   P
Sbjct: 6   PYAPHPPPPQ-GGFPPQPPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPP 63


>02_01_0003 +
           13079-13610,14005-14312,14364-14549,14620-14707,
           14807-14887,14980-15044,15357-15497,15578-15694,
           15995-16237,16326-16383,18127-18224
          Length = 638

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 762 PGXXPGAXPGXXXPGGXPG 706
           PG  PG  PG   PGG PG
Sbjct: 560 PGGMPGGFPGGAMPGGVPG 578



 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -1

Query: 759 GXXPGAXPGXXXPGGXPGXXXXRXXPXXXP 670
           G  PG  PG   PGG PG       P   P
Sbjct: 539 GGFPGGMPGGGFPGGMPGGGFPGGMPGGFP 568



 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -1

Query: 759 GXXPGAXPGXXXPGGXPGXXXXRXXPXXXP 670
           G  PG  PG   PGG PG       P   P
Sbjct: 548 GGFPGGMPGGGFPGGMPGGFPGGAMPGGVP 577


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/84 (23%), Positives = 21/84 (25%), Gaps = 6/84 (7%)
 Frame = -2

Query: 752 PXGPXPXXPXXGGXPGXXXXXXPXXXXPPXXPXT------PRXPXXXXXXPXXXXPXPXX 591
           P  P P  P  G  P       P    PP  P +      P  P      P    P P  
Sbjct: 545 PPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPP 604

Query: 590 PXXXPXXXXXXXXXXXPXXPXXXP 519
           P   P           P  P   P
Sbjct: 605 PPPPPPILPNRSVPPPPPPPPPLP 628


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,884,060
Number of Sequences: 37544
Number of extensions: 172983
Number of successful extensions: 573
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)