Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_D17
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL022716-5|CAB97232.1|  291|Caenorhabditis elegans Hypothetical ...    30   2.1  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   4.8  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>AL022716-5|CAB97232.1|  291|Caenorhabditis elegans Hypothetical
           protein C24F3.6 protein.
          Length = 291

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/63 (28%), Positives = 18/63 (28%), Gaps = 1/63 (1%)
 Frame = -2

Query: 761 PXXPXGPXPXXPXXGGXPGXXXXXXPXXXXPPXXPXTPRXPXXXXXXPXXXXP-XPXXPX 585
           P  P  P P  P   G PG      P     P  P  P  P      P    P  P  P 
Sbjct: 128 PCEPLTPPPCKPCPEGPPGPAGPPGPDGNKGPLGPPGPPGPEGPNGEPGNKGPAGPPGPG 187

Query: 584 XXP 576
             P
Sbjct: 188 GKP 190


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/81 (24%), Positives = 20/81 (24%)
 Frame = -2

Query: 761 PXXPXGPXPXXPXXGGXPGXXXXXXPXXXXPPXXPXTPRXPXXXXXXPXXXXPXPXXPXX 582
           P  P  P    P   G PG      P    PP     P  P      P    P P  P  
Sbjct: 297 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPP--PPR 354

Query: 581 XPXXXXXXXXXXXPXXPXXXP 519
            P           P  P   P
Sbjct: 355 YPSAGPGMYPPPPPSRPPAPP 375


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/81 (24%), Positives = 20/81 (24%)
 Frame = -2

Query: 761 PXXPXGPXPXXPXXGGXPGXXXXXXPXXXXPPXXPXTPRXPXXXXXXPXXXXPXPXXPXX 582
           P  P  P    P   G PG      P    PP     P  P      P    P P  P  
Sbjct: 307 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPP--PPR 364

Query: 581 XPXXXXXXXXXXXPXXPXXXP 519
            P           P  P   P
Sbjct: 365 YPSAGPGMYPPPPPSRPPAPP 385


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 762 PGXXPGAXPGXXXPGGXPG 706
           P   PGA PG   PGG PG
Sbjct: 447 PPGPPGAYPGNGAPGGPPG 465


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,783,571
Number of Sequences: 27780
Number of extensions: 120190
Number of successful extensions: 438
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)