Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_D15
(1002 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.15
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.59
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 5.5
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.15
Identities = 26/116 (22%), Positives = 29/116 (25%)
Frame = +1
Query: 619 APXGPXSLSXXXPRPSXXXXXXXPPPXXXXPXVXXPPXXXTXPXXXXPXXPXPXXXPPPX 798
AP P P P+ P P P V P P P P P
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160
Query: 799 PPXXXXXXXXXPXXXXXXPPXGXAXXXAXXSXPXPPXPXXPXXXXXAIPPXPXXPP 966
P P PP A P PP P ++ P PP
Sbjct: 1161 VPKPSVAAPPVPAPSSGIPP---VPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Score = 29.9 bits (64), Expect = 0.59
Identities = 27/114 (23%), Positives = 27/114 (23%), Gaps = 2/114 (1%)
Frame = +1
Query: 631 PXSLSXXXPRPSXXXXXXXPP--PXXXXPXVXXPPXXXTXPXXXXPXXPXPXXXPPPXPP 804
P S P PS P P P V PP P P P P PP P
Sbjct: 1069 PSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPK--PSVAVPPVPAPSGAPPVPKP 1126
Query: 805 XXXXXXXXXPXXXXXXPPXGXAXXXAXXSXPXPPXPXXPXXXXXAIPPXPXXPP 966
P P A PP P P PP
Sbjct: 1127 SVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.9 bits (64), Expect = 0.59
Identities = 20/74 (27%), Positives = 21/74 (28%)
Frame = -2
Query: 965 GGXXGXGGXAXXXXXGXXGWGGXGXXXXAXXXAXPXGGXXXXXXGXXXXXXXXXGGXGGG 786
GG G G G G+GG G GG G GG GGG
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250
Query: 785 XXXGXGXXGXXXXG 744
G G G
Sbjct: 251 LGGFGGGPGGFGGG 264
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 1.0
Identities = 27/110 (24%), Positives = 31/110 (28%), Gaps = 1/110 (0%)
Frame = +1
Query: 622 PXGPXSLSXXXPRPSXXXXXXXPPPXXXXPXVXXPPXXXTXPXXXXPXXPXPXXXPPPXP 801
P P S + P + PPP V PP + P P P PPP
Sbjct: 151 PPSPAS-APPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPM--PPKVPPPPLS 207
Query: 802 PXXXXXXXXXPXXXXXXPPXGXAXXXAXXSXPXP-PXPXXPXXXXXAIPP 948
P PP G A S P P P +PP
Sbjct: 208 QAPVANTSSRP--SSFAPPAGHAPNVTSESPKFPNRGPSIPSASVPPVPP 255
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +1
Query: 880 AXXSXPXPPXPXXPXXXXXAIPPXPXXPP 966
A S P PP P + PP P PP
Sbjct: 123 APPSAPAPPTPQSELRPPTSAPPRPSIPP 151
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/50 (28%), Positives = 14/50 (28%)
Frame = +1
Query: 655 PRPSXXXXXXXPPPXXXXPXVXXPPXXXTXPXXXXPXXPXPXXXPPPXPP 804
P PS P P PP P P P PP PP
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
Score = 25.8 bits (54), Expect = 9.6
Identities = 13/50 (26%), Positives = 14/50 (28%)
Frame = +1
Query: 655 PRPSXXXXXXXPPPXXXXPXVXXPPXXXTXPXXXXPXXPXPXXXPPPXPP 804
P P PP PP + P P P PPP P
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Frame = +3
Query: 621 PXGPXXPXXXPPXPXAPXXXXXPP--PPXXXPXXXXP 725
P P P PP P AP PP PP P P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/38 (31%), Positives = 12/38 (31%)
Frame = +1
Query: 691 PPXXXXPXVXXPPXXXTXPXXXXPXXPXPXXXPPPXPP 804
PP P PP P P P PPP P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 25.8 bits (54), Expect = 9.6
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 889 SXPXPPXPXXPXXXXXAIPPXPXXPPXXRFXPRXALS 999
S P PP P + PP P PP P A S
Sbjct: 1703 SAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASS 1739
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.8
Identities = 21/75 (28%), Positives = 25/75 (33%)
Frame = +1
Query: 724 PPXXXTXPXXXXPXXPXPXXXPPPXPPXXXXXXXXXPXXXXXXPPXGXAXXXAXXSXPXP 903
PP + P P PPP PP P PP + A + P P
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPP------RSAPSTGRQPPPLSSS--RAVSNPPAP 391
Query: 904 PXPXXPXXXXXAIPP 948
P P P A+PP
Sbjct: 392 P-PAIPGRSAPALPP 405
Score = 27.9 bits (59), Expect = 2.4
Identities = 30/125 (24%), Positives = 35/125 (28%)
Frame = +3
Query: 621 PXGPXXPXXXPPXPXAPXXXXXPPPPXXXPXXXXPXXXPNXXXXXXXXXXSPRXXSPAXP 800
P P P PP P PPP P PN +P +PA
Sbjct: 231 PIPPSIPSSRPPE-RVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPI----APVSMNPAIN 285
Query: 801 SXXXXXXXXXPXXPPXGPAXXXRAXXRXXXATXPPPXXXPPXXXXXXPPXPXXXAXXAXX 980
S P PP P+ A PPP P PP + +
Sbjct: 286 STSK------PPLPP--PSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLP 337
Query: 981 PPXGP 995
PP P
Sbjct: 338 PPPPP 342
Score = 26.2 bits (55), Expect = 7.2
Identities = 23/94 (24%), Positives = 23/94 (24%), Gaps = 1/94 (1%)
Frame = +1
Query: 688 PPPXXXXPXVXXPPXXXTXPXXXXPXXPXPXXXPPPXPPXXXXXXXXXPXXXXXXPPXGX 867
PPP P P P P PP PP P P
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP------SLPPSAPPSLPMGAP 444
Query: 868 AXXXAXXSXP-XPPXPXXPXXXXXAIPPXPXXPP 966
A S P PP P P P PP
Sbjct: 445 AAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 5.5
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = +1
Query: 790 PPXPPXXXXXXXXXPXXXXXXPPXGXAXXXAXXSXPXPPXPXXPXXXXXAIPPXPXXPP 966
PP PP P PP A PP P P PP P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPP-------APIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.150 0.515
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,813,279
Number of Sequences: 5004
Number of extensions: 21950
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 519268360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -