Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_D14
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.053
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 32.7 bits (71), Expect = 0.053
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
 Frame = +3

Query: 366 KKKNXPPPPPXXXXXGGXXXKK--KKXXXPPPPPPP 467
           KK+  PPPPP     G             PPPPPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 31.9 bits (69), Expect = 0.092
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 381 PPPPPXXXXXGGXXXKKKKXXXPPPPPP 464
           PPPPP     G      +    PPPPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 31.9 bits (69), Expect = 0.092
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +1

Query: 382 PPPPPXXXXXGXXXXKKKXXXPPPPPPP 465
           PPPPP     G      +    PPPPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +1

Query: 382 PPPPPXXXXXGXXXXKKKXXXPPPPPPP 465
           PP PP                PPPPPPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPP 317



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +3

Query: 381 PPPPPXXXXXGGXXXKKKKXXXPPPPPP 464
           PP PP             K   PPPPPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPP 317


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +1

Query: 382 PPPPPXXXXXGXXXXKKKXXXPPPPPPP 465
           PPPPP     G          PPPPPPP
Sbjct: 762 PPPPPPPGVAGAGPP------PPPPPPP 783



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +3

Query: 381 PPPPPXXXXXGGXXXKKKKXXXPPPPPPP 467
           PPPPP      G          PPPPPPP
Sbjct: 761 PPPPPPPPGVAGAGP-------PPPPPPP 782


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +3

Query: 375 NXPPPPPXXXXXGGXXXKKKKXXXPPPPPPP 467
           N PPPPP            +    PPPPPPP
Sbjct: 8   NPPPPPPPPGF--------EPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 896,370
Number of Sequences: 5004
Number of extensions: 13438
Number of successful extensions: 168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)