Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_D13
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.68 
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    29   0.89 
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    27   3.6  

>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 167

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 338 GPPXRCRWCP-GIPRWTRTSLPGRDAIHRRPVALI 439
           GPP + RW P GI +  R+++ GR+ I +  +  I
Sbjct: 58  GPPGKIRWFPLGIRKEVRSNVSGREIIIKMIITFI 92


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 30/127 (23%), Positives = 50/127 (39%)
 Frame = +1

Query: 160 TLTPDVRSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEANRRL*NVGRLGXXXXX 339
           T+TP+    P S     + + + N  +RR G+ + R    +  +N+R  N  R       
Sbjct: 149 TITPNFTHTPISNR---KSSRSRNDGSRRNGNGRRRGNYSSHGSNKRQTNYSREKDASRS 205

Query: 340 XXXXVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAARXSAGXAPHGLTPSGRPLTFTG 519
                P        D N   GS   + + G+    T+   S+  APH  + SG   +  G
Sbjct: 206 IDSSNPSAEYRD--DINNTFGSQTVSSANGKEVPQTS-EDSSSQAPHHSSSSGHAPSQQG 262

Query: 520 GEAXTYR 540
           G   +Y+
Sbjct: 263 GNKHSYK 269


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +1

Query: 397 AGSGRDTPSTGRSNHSTAARXSAGXAPHGLTPSG 498
           A S R TP+  RS  STA R        G   +G
Sbjct: 142 ASSARQTPAPSRSGASTAGRRRTSATTRGAIQNG 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,432
Number of Sequences: 5004
Number of extensions: 43704
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)