Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_D11
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1174 - 26696869-26698191 31 1.1
08_01_0059 - 394001-394708 30 2.0
12_02_0299 - 17051570-17052474,17053542-17053755 29 2.6
11_06_0610 - 25449085-25453284 29 3.5
09_02_0543 + 10427321-10428315,10428440-10429154 29 3.5
12_02_0370 + 18139557-18140469,18140561-18140704,18140804-181409... 28 6.0
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 6.0
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 28 8.0
07_01_0862 - 7172083-7172931 28 8.0
02_05_0686 - 30900748-30902167,30903442-30904742 28 8.0
>12_02_1174 - 26696869-26698191
Length = 440
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/57 (28%), Positives = 17/57 (29%)
Frame = +2
Query: 455 PXXXXPPPXXXXXXXPXXPXXXXPPXPXXVXXPAGXXAXXXXPTQXPPPXXXPXPXR 625
P P P P P PP P V P P+ PP P P R
Sbjct: 141 PPPVKPQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTR 197
>08_01_0059 - 394001-394708
Length = 235
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/60 (26%), Positives = 16/60 (26%)
Frame = +1
Query: 481 PPXXXXXXXPXXXXPXXPXXXXXPXXXPRXXXXPXPTPPPXXXPXPXXXXXXXXXXXXPP 660
PP P P P P P P PTP P P P PP
Sbjct: 3 PPPPPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAPPPPSHPLAPPPPHISPP 62
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/49 (28%), Positives = 14/49 (28%)
Frame = +1
Query: 454 PXXXXPXXXPPXXXXXXXPXXXXPXXPXXXXXPXXXPRXXXXPXPTPPP 600
P P PP P P P P P P P PPP
Sbjct: 282 PIFSPPSPPPPPPPAFPFPFPQLPPLPHFPPLPSFYPSPPPPPPPPPPP 330
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/50 (30%), Positives = 15/50 (30%)
Frame = +1
Query: 469 PXXXPPXXXXXXXPXXXXPXXPXXXXXPXXXPRXXXXPXPTPPPXXXPXP 618
P PP P P P P P P P PPP P P
Sbjct: 282 PIFSPPSPPPPPPPAFPFPF-PQLPPLPHFPPLPSFYPSPPPPPPPPPPP 330
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/55 (29%), Positives = 17/55 (30%)
Frame = +2
Query: 455 PXXXXPPPXXXXXXXPXXPXXXXPPXPXXVXXPAGXXAXXXXPTQXPPPXXXPXP 619
P PPP P PP P + PA P PPP P P
Sbjct: 1276 PVKSLPPPAPVSLPPPVVKSLP-PPAPVSLPPPAVKPLPPPAPVSLPPPAVKPLP 1329
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +2
Query: 470 PPPXXXXXXXPXXPXXXXPPXPXXVXXPAGXXAXXXXPTQXPPPXXXP 613
PPP P P PP P P A P PPP P
Sbjct: 26 PPPAIPESGPPPPPAPDMPPPPP-TPAPQSSPAPPPAPDMTPPPGPGP 72
>12_02_0370 +
18139557-18140469,18140561-18140704,18140804-18140956,
18141032-18141147,18141231-18141398,18142110-18142334,
18142458-18142577
Length = 612
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/55 (30%), Positives = 18/55 (32%)
Frame = +2
Query: 455 PXXXXPPPXXXXXXXPXXPXXXXPPXPXXVXXPAGXXAXXXXPTQXPPPXXXPXP 619
P PPP P PP P PA P+Q PPP P P
Sbjct: 49 PSSKPPPPTQTAPPVPVVISEPPPPQPQPEPQPAA-------PSQPPPPQEQPSP 96
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/49 (28%), Positives = 14/49 (28%)
Frame = +2
Query: 455 PXXXXPPPXXXXXXXPXXPXXXXPPXPXXVXXPAGXXAXXXXPTQXPPP 601
P PPP P PP P P A P PPP
Sbjct: 544 PPPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPP 592
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/32 (34%), Positives = 12/32 (37%)
Frame = +1
Query: 523 PXXPXXXXXPXXXPRXXXXPXPTPPPXXXPXP 618
P P P P+ P P PPP P P
Sbjct: 133 PRGPGQEPPPPHVPKAAPPPPPPPPPHAPPGP 164
>07_01_0862 - 7172083-7172931
Length = 282
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/64 (25%), Positives = 18/64 (28%)
Frame = +1
Query: 469 PXXXPPXXXXXXXPXXXXPXXPXXXXXPXXXPRXXXXPXPTPPPXXXPXPXXXXXXXXXX 648
P PP P P P P+ P P+PPP P P
Sbjct: 147 PPPLPPRKKAMLFPLPLPPRKKPLLYPPPLPPKKKPLPPPSPPP-QPPLPEKENTPLPPL 205
Query: 649 XXPP 660
PP
Sbjct: 206 LLPP 209
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/44 (29%), Positives = 13/44 (29%)
Frame = +1
Query: 469 PXXXPPXXXXXXXPXXXXPXXPXXXXXPXXXPRXXXXPXPTPPP 600
P PP P P P P P P P PPP
Sbjct: 327 PPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPP 370
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.146 0.488
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,271,205
Number of Sequences: 37544
Number of extensions: 114630
Number of successful extensions: 1087
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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