Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_D07
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 237 9e-64
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 237 9e-64
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 29 0.66
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.0
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 3.5
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 4.7
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 26 6.1
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 8.1
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 237 bits (581), Expect = 9e-64
Identities = 117/195 (60%), Positives = 140/195 (71%)
Frame = -2
Query: 694 EKPIPVDXXFAQDEMIDCIGVTKGQRIPKVSXXVGTQRKXPRKTHKXXRKVACIGAWHPX 515
EK + + F Q+EMID IGVT+G+ + GT+R PRKTH+ RKVACIGAWHP
Sbjct: 200 EKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR-LPRKTHRGLRKVACIGAWHPA 258
Query: 514 RVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGF 335
V +TVARAG GY HRT++N KIYRIG G D K NAST++D +EK ITPMGGF
Sbjct: 259 NVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGF 311
Query: 334 PHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQ 155
YG V NDFVM+ G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQ
Sbjct: 312 VRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQ 371
Query: 154 TPADKAAFMGTLKKD 110
TPA+ F+GTLKKD
Sbjct: 372 TPAEAKQFLGTLKKD 386
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 237 bits (581), Expect = 9e-64
Identities = 117/195 (60%), Positives = 140/195 (71%)
Frame = -2
Query: 694 EKPIPVDXXFAQDEMIDCIGVTKGQRIPKVSXXVGTQRKXPRKTHKXXRKVACIGAWHPX 515
EK + + F Q+EMID IGVT+G+ + GT+R PRKTH+ RKVACIGAWHP
Sbjct: 200 EKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR-LPRKTHRGLRKVACIGAWHPA 258
Query: 514 RVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGF 335
V +TVARAG GY HRT++N KIYRIG G D K NAST++D +EK ITPMGGF
Sbjct: 259 NVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGF 311
Query: 334 PHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQ 155
YG V NDFVM+ G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQ
Sbjct: 312 VRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQ 371
Query: 154 TPADKAAFMGTLKKD 110
TPA+ F+GTLKKD
Sbjct: 372 TPAEAKQFLGTLKKD 386
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.1 bits (62), Expect = 0.66
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 401 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 499
NFA+L+ SL ++ +F++H +T + T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 368 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 490
++ L RC++ F +LF S S + FL S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 131 HGYTQEGSYSRRSCGYHNPS 72
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 353 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPXRMPS 529
N FL + SRC V N+ I + V S ++F++ M+ + S S+ + R+ S
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY-GSPSHKIQQSLRIAS 424
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 582 LCVPTXXDTFGILCPLVTPMQSI 650
L VP+ D FGI+ P + PM ++
Sbjct: 619 LGVPSSVDGFGIILPCIIPMGTV 641
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 413 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPXRMPSSNA 538
LF+D LS D L+H ++ + T S H SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,645
Number of Sequences: 5004
Number of extensions: 58815
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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