Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_D06
         (805 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0299 - 17051570-17052474,17053542-17053755                       35   0.066
05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938     33   0.20 
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082...    33   0.20 
01_05_0490 + 22672241-22674679                                         25   3.8  

>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 35.1 bits (77), Expect = 0.066
 Identities = 20/56 (35%), Positives = 22/56 (39%)
 Frame = +3

Query: 633 SPPPPPXXXFFFFFXXXXPXXFXFFFFFFFFXXXPPPPPPXXXKXXFFFFFXXXXP 800
           SPPPPP   F F F    P         F+    PPPPPP      F + F    P
Sbjct: 288 SPPPPPPPAFPFPFPQLPPLPHFPPLPSFYPSPPPPPPPPPPPPPSFPWPFPPLAP 343


>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
          Length = 331

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = +3

Query: 660 FFFFFXXXXPXXFXFFFFFFFF 725
           FFFFF       F FFFFFFFF
Sbjct: 62  FFFFFFFFFFFFFFFFFFFFFF 83



 Score = 33.5 bits (73), Expect = 0.20
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = +3

Query: 660 FFFFFXXXXPXXFXFFFFFFFF 725
           FFFFF       F FFFFFFFF
Sbjct: 63  FFFFFFFFFFFFFFFFFFFFFF 84



 Score = 33.5 bits (73), Expect = 0.20
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = +3

Query: 660 FFFFFXXXXPXXFXFFFFFFFF 725
           FFFFF       F FFFFFFFF
Sbjct: 64  FFFFFFFFFFFFFFFFFFFFFF 85



 Score = 33.5 bits (73), Expect = 0.20
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = +3

Query: 660 FFFFFXXXXPXXFXFFFFFFFF 725
           FFFFF       F FFFFFFFF
Sbjct: 65  FFFFFFFFFFFFFFFFFFFFFF 86


>05_03_0496 +
           14706959-14707020,14707173-14707538,14708070-14708209,
           14708319-14708566,14708814-14708946,14709096-14709159,
           14709284-14709380,14709505-14709607,14709702-14709838,
           14710063-14710152,14710240-14710401
          Length = 533

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = +3

Query: 660 FFFFFXXXXPXXFXFFFFFFFF 725
           FFFFF       F FFFFFFFF
Sbjct: 87  FFFFFFFFFFFFFFFFFFFFFF 108


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 24.6 bits (51), Expect(2) = 3.8
 Identities = 13/39 (33%), Positives = 14/39 (35%)
 Frame = +3

Query: 636 PPPPPXXXFFFFFXXXXPXXFXFFFFFFFFXXXPPPPPP 752
           PPPPP   F+  F                    PPPPPP
Sbjct: 611 PPPPPSSIFYNLFKKGGSKSRR---IHSVAPPQPPPPPP 646



 Score = 23.0 bits (47), Expect(2) = 3.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 735 PPPPPPXXXKXXFF 776
           PPPPPP   +  F+
Sbjct: 664 PPPPPPPQQQPPFY 677


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,719,846
Number of Sequences: 37544
Number of extensions: 241543
Number of successful extensions: 2782
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2556
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)