Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_D02
(744 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 31 0.13
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c... 28 1.6
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 27 2.1
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 3.7
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 4.9
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 26 6.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 6.5
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 25 8.6
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 25 8.6
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 25 8.6
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 8.6
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 25 8.6
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 31.5 bits (68), Expect = 0.13
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +1
Query: 388 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRTPNTAASP-DTNA 564
P T+ T + PP+ P ++ TST T T + TP T+++ +T+
Sbjct: 1643 PITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTST 1702
Query: 565 P 567
P
Sbjct: 1703 P 1703
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Frame = +1
Query: 373 PQQILPATTQTTILRVP-PLLHDVTPTLRKPT--------ANTCQARTSTHFTGKTCIRQ 525
P L ++ TTI P + + KPT ANT TST T T +
Sbjct: 321 PSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNS 380
Query: 526 RTPNTAAS 549
TP T++S
Sbjct: 381 STPITSSS 388
>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 248
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 318 PSATCADSQDILPPCKLLTATNLTSHHANYNFTGST 425
PSA+ + S + PP ++L+ ++TS HA N T
Sbjct: 213 PSASASISDSLPPPYQVLSVPSVTSTHAFSNNANQT 248
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 510 NLHPPADPEHRRIARHERTGRL 575
NL PA+ +HRR+ R +R G L
Sbjct: 235 NLDSPAELKHRRLVRSQRNGPL 256
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 456 EANREHLSSTHKHALHRKNLHPPADPEHRRIARHERTGRLILQVTTTS 599
E N ++L + K +L PP D R E+TG L Q T+TS
Sbjct: 60 EINDKNLEA-EKDIESNLSLRPPEDDLDSRSIESEQTGTLSKQTTSTS 106
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 356 TMQTSYRNKSYQPPRKLQFYGFHLSYTMLLPH*GSQPRTLVKHAQART 499
TM + ++K RKL+ HL + L+ H QP +HAQ RT
Sbjct: 1356 TMLKTSQSKDSSSLRKLRATCLHLLFASLVAHKFDQP----QHAQTRT 1399
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.8 bits (54), Expect = 6.5
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 403 TTILRVPPLLHDVTPTLRKPT-ANTCQARTSTHFTGKTCIRQRTPNTAASPDTNAPDVLS 579
T ++ P +++ P L + T AN+ + +++RT NTAA+P P L
Sbjct: 531 TNLMGSSPGMYNHMPYLNRATSANSITSPGVLPEGMAASLKKRTTNTAATPQAALPTTLD 590
Query: 580 YRSRR 594
+ R
Sbjct: 591 TKKDR 595
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 697 NTXNXTRSMXSGSSKQANKKASKFPRG 617
N T S + +SK AN+K + FPRG
Sbjct: 1630 NLLTPTISNGTRASKHANEKENTFPRG 1656
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 655 KQANKKASKFPRGRKIDTXEVVVTCKIRRPVRS 557
K N+ + +FP KI TCK +P RS
Sbjct: 139 KNWNEASRRFPYDYKIFFPNKCSTCKFEKPARS 171
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 343 KTFYHHANFLPQQIL 387
+TF HHAN P++IL
Sbjct: 13 RTFAHHANLTPRKIL 27
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +3
Query: 372 TATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPADPEHRRIA 551
T T S ++ + S S + H + +E S H+H HR++ +P ++
Sbjct: 110 TNTEKDSRSIAHSTSRSRSTSPANRHRRK-EKERTRSNHRHGSHRRH-----EPYRTHLS 163
Query: 552 RHER 563
RH R
Sbjct: 164 RHHR 167
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +1
Query: 358 HANFLPQQILPATTQTTILRVPPLLHDVTPTLRKPT--ANT 474
H N + P T T VPP H T T+ PT ANT
Sbjct: 114 HVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPTTHANT 154
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 427 LLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRTP--NTAASPDTNAPDVLSY 582
L HD P +R+P A C A+ T + I + P N+ ++ D ++ +LS+
Sbjct: 174 LCHDEAPMVRRPAATNC-AKFVFLVTKQEAIDEFIPLFNSLSNDDQDSVRLLSF 226
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,480
Number of Sequences: 5004
Number of extensions: 55901
Number of successful extensions: 202
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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