Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_D02
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 33 0.18
03_05_1101 - 30408944-30410410 31 1.3
11_01_0565 - 4457019-4457052,4457175-4458675,4460791-4460836 30 2.2
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519... 30 2.2
01_06_0140 - 26881282-26881290,26882027-26882128,26882816-268829... 30 2.2
02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142 29 3.9
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302... 29 3.9
03_01_0404 + 3138624-3140096 29 5.2
07_01_0608 + 4515709-4515951,4516085-4516678 28 6.8
01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,869... 28 6.8
09_06_0239 - 21794691-21795986 28 9.0
07_03_0512 - 18954515-18955972 28 9.0
>01_06_0381 +
28878811-28879120,28880189-28880331,28880753-28881532,
28882568-28883968
Length = 877
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +3
Query: 450 TEEANREHLSSTHKHALHRKNLHPPADPEHRRIARHERTGR 572
+ E EH SS +H HR + H D EHR RH+R R
Sbjct: 778 SSEDEHEHRSSKSRHR-HRDDYHYHEDDEHRSSHRHQRDHR 817
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 390 SHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHAL--HRKNLHP 521
S NY+ S +R H E +R H S HKH L H K+L P
Sbjct: 725 SDEENYDSEESYKHSR-KKHRSEDSRAHTSDVHKHKLKRHSKDLEP 769
>03_05_1101 - 30408944-30410410
Length = 488
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 195 YWSPRAPAALALGCATS*ETVLWQVQPETST 103
Y+SPR LALG S LW ++PE S+
Sbjct: 294 YFSPRQVRELALGLEASNHPFLWVIRPEDSS 324
>11_01_0565 - 4457019-4457052,4457175-4458675,4460791-4460836
Length = 526
Score = 29.9 bits (64), Expect = 2.2
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Frame = -3
Query: 334 AQVAEGETSAVAAHPVRENRADR---LD-----GTEAGRQVRQTTRSRLQHGLPILEPPR 179
A ++E T AV PV N A R LD G R + + + + + +GL + PP
Sbjct: 81 AYLSEPVTDAVITVPVYFNNAQREATLDAAAIAGLNVMRIINEPSAAAIAYGLDKMPPPA 140
Query: 178 SGCTCARVRHLVGDCAVAGPTRDVNV 101
SG A L+ D + G T DV++
Sbjct: 141 SGADAAGRTVLIFD--LGGGTLDVSL 164
>09_03_0058 +
11950668-11950701,11951068-11951106,11951586-11951982,
11952016-11952314,11953743-11956795
Length = 1273
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 17 LRLHSDLEWNIKGKPKPLIYNTLKFWNTHVDVSGWTCHSTVSYEVAHPSASA 172
LRLH D +W ++ K + ++ TL +T + + W H V +V + A
Sbjct: 295 LRLHRDKQWAVQDK-RQVLQRTLTEMHTFIKHAEWWFHKDVFAQVLQDAKDA 345
>01_06_0140 -
26881282-26881290,26882027-26882128,26882816-26882924,
26883712-26883860,26883941-26884043,26884635-26884810,
26885004-26885066,26885258-26885346,26885428-26885538,
26885610-26885744,26886415-26886580,26886788-26886856,
26886943-26887230,26888612-26888866
Length = 607
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -3
Query: 577 IRRPVRSCLAMRRCSGSAGGCRFFR*SACLCVLDKCSRLASSV 449
+R R A R C GSAG R R SA V+ + RL + V
Sbjct: 31 LRPAARLSFAPRWCGGSAGAARARRESAVTSVISRAPRLDAEV 73
>02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142
Length = 534
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 340 HKTFYHHANFLPQQILPATTQTTILRVPPLLHDVTPTLRKPTAN 471
H+ F +FLP +I L+VPP LH V P P A+
Sbjct: 75 HRWFAQGFHFLPARIPMDGPSGWFLKVPPPLHTVDPPGSPPPAS 118
>01_07_0213 -
42028941-42029055,42029444-42029480,42029876-42030244,
42030332-42031201,42051574-42052891
Length = 902
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +3
Query: 288 TGWAATAEVSPSATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANR 467
TG A+++ + SA A + +LLT+ TSH + N T S SH + + R
Sbjct: 680 TGSASSSPATASAAAASKKP-----RLLTSQTTTSHTSTSNATTPRSFDTTSSHQDASFR 734
Query: 468 EHL 476
E L
Sbjct: 735 ESL 737
>03_01_0404 + 3138624-3140096
Length = 490
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/74 (27%), Positives = 26/74 (35%)
Frame = +3
Query: 318 PSATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHA 497
PSA A + LP LLT L H + + SL R S + L +
Sbjct: 24 PSAAAAPTAPALPVQALLTTAGLLPRHPDLSLVALNSLLRVLSRRASSPAHPLLALRLLL 83
Query: 498 LHRKNLHPPADPEH 539
L P P+H
Sbjct: 84 LMLSPASPLPPPDH 97
>07_01_0608 + 4515709-4515951,4516085-4516678
Length = 278
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -1
Query: 309 PRSRPTQSARTGQIASTVRRPADRSAKRRDHASSTDCRYWSPRAPAA 169
PR RP +SA+T S ++ A +AK++ A++T + APAA
Sbjct: 224 PRGRPAKSAKTSAKDSPAKKAAPVAAKKK--AAATKKKASVAAAPAA 268
>01_01_1098 -
8691312-8692430,8692640-8693509,8694522-8696105,
8696199-8696258,8696336-8696414,8696494-8696555,
8697129-8697204,8697367-8697419,8698181-8698270,
8698411-8698458
Length = 1346
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 203 SVLEA*SRRLADLSAGLRTVEAICPVLADWVGRDRGSLTFGYLCRLTR 346
S+L LA L A LRT++ IC DW R +LC + R
Sbjct: 695 SILRKGEDDLAQLYA-LRTIDNICSQGTDWTSRFASQDVISHLCYIYR 741
>09_06_0239 - 21794691-21795986
Length = 431
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 309 EVSPSATC-ADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTE 455
+ P +C A + D+ P K T NLTS NY ++ S T Y TE
Sbjct: 115 QCQPCLSCVAQAGDMYDPNKTETYANLTSSSYNYTYS-KQSFTSGYFATE 163
>07_03_0512 - 18954515-18955972
Length = 485
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/70 (28%), Positives = 26/70 (37%)
Frame = -3
Query: 361 HGGKMSCESAQVAEGETSAVAAHPVRENRADRLDGTEAGRQVRQTTRSRLQHGLPILEPP 182
HGG+ E V + + P A +D GR R H LP +EPP
Sbjct: 30 HGGRGDGEGPAVT---VTVLVVRPATSESAAEVDA-HVGRVEASGLGVRF-HRLPAVEPP 84
Query: 181 RSGCTCARVR 152
GC V+
Sbjct: 85 PMGCAAGNVQ 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,454,232
Number of Sequences: 37544
Number of extensions: 459617
Number of successful extensions: 1620
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1620
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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