Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_D01
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0125 + 1001397-1001865,1002743-1002810,1003359-1003490,100...    29   2.8  
04_01_0409 - 5409018-5410268                                           28   6.6  
01_06_0475 + 29610268-29610711                                         28   6.6  
07_03_0059 + 12901191-12901316,12901333-12901452,12901891-129021...    28   8.7  
06_03_0049 + 15961706-15962017,15962952-15963851,15964769-159649...    28   8.7  

>08_01_0125 +
           1001397-1001865,1002743-1002810,1003359-1003490,
           1003649-1003810,1003973-1004260
          Length = 372

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 21/53 (39%), Positives = 25/53 (47%)
 Frame = -2

Query: 303 STNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGG 145
           S NG       R P SS  +L  +G    L+L  S   F P   SG+R RSGG
Sbjct: 200 SANGVISNVTLRQPDSSGGTLTYEGRFELLSLSGS---FMPTENSGTRSRSGG 249


>04_01_0409 - 5409018-5410268
          Length = 416

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 404 SRVVPLYRSGAWTPTADTY*WTLSPXRH--GRSTFLT 508
           S  V +Y +G W PT D   WT +P RH  G ST+L+
Sbjct: 273 STPVQMYEAG-WAPTGDAPGWTQAP-RHSIGVSTWLS 307


>01_06_0475 + 29610268-29610711
          Length = 147

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -2

Query: 267 SPFSSNPSLATKGSTSKLTLRHSPLSFSPD 178
           SP SS+P      S+++ TL HSP S SPD
Sbjct: 54  SPMSSSPP---SRSSTRATLTHSPSSASPD 80


>07_03_0059 +
           12901191-12901316,12901333-12901452,12901891-12902170,
           12902348-12902895,12902943-12903122,12904331-12904846
          Length = 589

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +2

Query: 404 SRVVPLYRSGAWTPTADTY*WTLSPXRH--GRSTFLT 508
           S  V +Y +G W PT D   WT +P RH  G ST+ T
Sbjct: 446 STPVQMYEAG-WAPTGDAPGWTQAP-RHSIGVSTWAT 480


>06_03_0049 +
           15961706-15962017,15962952-15963851,15964769-15964913,
           15964969-15965705
          Length = 697

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 404 SRVVPLYRSGAWTPTADTY*WTLSPXRH 487
           S +V +Y +G W PT D   WT +P RH
Sbjct: 569 STLVQMYEAG-WAPTGDATGWTQAP-RH 594


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,805,740
Number of Sequences: 37544
Number of extensions: 294820
Number of successful extensions: 748
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)