Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_C19
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.14 
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    29   0.77 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    29   0.77 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.0  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    28   1.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.1  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   7.2  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = +1

Query: 652  PXSXAXPXL--PXXPKLXXSXPXPXS-PPXXSXPPXXPXPXXPXISPXXXPS 798
            P S A P +  P  P    S P P S PP  + PP  P P  P  S    P+
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPN 1745


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 18/67 (26%), Positives = 23/67 (34%)
 Frame = +3

Query: 561 PXPPXXPXXPXXLSXXXSPXSSXSGXRSXSPXLPRGPXXPXXAQAPXXXXXPXVPXXXVS 740
           P PP  P  P   S    P +  +      P  P+ P  P   +AP     P VP    +
Sbjct: 515 PQPPAAPVVPEAPSVHQPPAAPVA---PEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEA 571

Query: 741 XPXXXPP 761
                PP
Sbjct: 572 LSVPQPP 578


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 18/51 (35%), Positives = 19/51 (37%)
 Frame = +1

Query: 610 LPPXPLXPGXXRXXPXSXAXPXLPXXPKLXXSXPXPXSPPXXSXPPXXPXP 762
           LPP    P      P     P  P  P L  S P P  PP  + PP  P P
Sbjct: 493 LPPTTFAPPGVPLPPI----PGAPGMPNLNMSQP-PMVPPGMALPPGMPAP 538


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/55 (27%), Positives = 17/55 (30%)
 Frame = +1

Query: 616 PXPLXPGXXRXXPXSXAXPXLPXXPKLXXSXPXPXSPPXXSXPPXXPXPXXPXIS 780
           P P  P      P     P  P  P +    P P  P      P  P P  P +S
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVS 786


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -3

Query: 347 GXXGAPPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 240
           G   +PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 96  GRSRSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
 Frame = +3

Query: 558 PPXPPXXPXXPXXLSXXXSPXSSXSGXRSXSPXLP--RGPXXPXXAQAPXXXXXPXVP 725
           PP PP  P      +    P    S  R+ SP +P    P       AP     P +P
Sbjct: 190 PPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLP 247


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 329 PPPLRSLISNLSNTCDLTPLPEW 261
           P P+ S    ++N  +L PLPEW
Sbjct: 10  PKPMDSSHIKVTNVKELKPLPEW 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,343,207
Number of Sequences: 5004
Number of extensions: 14588
Number of successful extensions: 54
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)