Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_C19
(802 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 1.3
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 31 1.3
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 31 1.3
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.3
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 31 1.3
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 31 1.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.3
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 29 5.1
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 29 5.1
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 5.1
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 28 6.8
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr... 28 8.9
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 28 8.9
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 28 8.9
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +3
Query: 558 PPXPPXXPXXPXXLSXXXSPXSSXSGXRSXSPXLPRGPXXP-XXAQAPXXXXXPXVP 725
PP PP P P +P + SP PRGP P A AP P P
Sbjct: 154 PPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPG-PRGPPGPAGEAGAPGPAGEPGTP 209
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/65 (29%), Positives = 24/65 (36%)
Frame = +1
Query: 589 PXXSXXXLPPXPLXPGXXRXXPXSXAXPXLPXXPKLXXSXPXPXSPPXXSXPPXXPXPXX 768
P +PP P PG P A +P P + P P PP PP P P
Sbjct: 67 PPVPNGFIPPPP-GPGGIPPPPPMFAG-GIPPPPPMMGGIPPP--PPMFGAPPPPPPPSG 122
Query: 769 PXISP 783
++P
Sbjct: 123 LGVAP 127
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/53 (26%), Positives = 18/53 (33%)
Frame = +1
Query: 613 PPXPLXPGXXRXXPXSXAXPXLPXXPKLXXSXPXPXSPPXXSXPPXXPXPXXP 771
PP P+ G P +P P + + P P P P P P P
Sbjct: 85 PPPPMFAGGIPPPPPMMGG--IPPPPPMFGAPPPPPPPSGLGVAPQPPRPKTP 135
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +3
Query: 558 PPXPPXXPXXPXXLSXXXSPXSSXSGXRSXSPXLPRGPXXP-XXAQAPXXXXXPXVP 725
PP PP P P +P + SP PRGP P A AP P P
Sbjct: 149 PPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPG-PRGPPGPAGEAGAPGPAGEPGTP 204
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/57 (33%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Frame = +3
Query: 558 PPXPPXXPXXPXXLSXXXSPXSSXSGXRSXSPXLPRGPXXPXXAQ-APXXXXXPXVP 725
PP PP P P SP P P+GP P A AP P VP
Sbjct: 152 PPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEPG-PKGPPGPPGAPGAPGTPGEPGVP 207
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/51 (31%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Frame = +1
Query: 613 PPXPLXPGXXRXXPXSXAXPXLPXX-PKLXXSXPXPXSPPXXSXPPXXPXP 762
PP P PG P P P + P P PP PP P P
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/51 (31%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Frame = +1
Query: 613 PPXPLXPGXXRXXPXSXAXPXLPXX-PKLXXSXPXPXSPPXXSXPPXXPXP 762
PP P PG P P P + P P PP PP P P
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +3
Query: 558 PPXPPXXPXXPXXLSXXXSPXSSXSGXRSXSPXLPRGPXXP-XXAQAPXXXXXPXVP 725
PP PP P P +P + SP PRGP P A AP P P
Sbjct: 149 PPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPG-PRGPPGPAGEAGAPGPAGEPGTP 204
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/57 (33%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Frame = +3
Query: 558 PPXPPXXPXXPXXLSXXXSPXSSXSGXRSXSPXLPRGPXXPXXAQ-APXXXXXPXVP 725
PP PP P P SP P P+GP P A AP P VP
Sbjct: 152 PPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEPG-PKGPPGPPGAPGAPGTPGEPGVP 207
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/51 (31%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Frame = +1
Query: 613 PPXPLXPGXXRXXPXSXAXPXLPXX-PKLXXSXPXPXSPPXXSXPPXXPXP 762
PP P PG P P P + P P PP PP P P
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 359
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/53 (28%), Positives = 16/53 (30%)
Frame = +1
Query: 613 PPXPLXPGXXRXXPXSXAXPXLPXXPKLXXSXPXPXSPPXXSXPPXXPXPXXP 771
PP P P + P S P P P PP P P P P
Sbjct: 216 PPGPPGPRGPKGPPGSNGLPSQNSGPPGPIGEMGPPGPPGPRGEPGPPGPFGP 268
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/53 (28%), Positives = 16/53 (30%)
Frame = +1
Query: 613 PPXPLXPGXXRXXPXSXAXPXLPXXPKLXXSXPXPXSPPXXSXPPXXPXPXXP 771
PP P P + P S P P P PP P P P P
Sbjct: 216 PPGPPGPRGPKGPPGSNGLPSQNSGPPGPIGEMGPPGPPGPRGEPGPPGPFGP 268
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = +1
Query: 613 PPXPLXPGXXRXXPXSXAXPXLPXXPKLXXSXPXPXSPPXXSXPPXXPXP 762
PP P P R S P P P+ P P SPP P P P
Sbjct: 122 PPPPPPPRKSRAGGSSPPPPPPPRVPRT----PPPRSPPPRRPPMTPPSP 167
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Frame = +1
Query: 613 PPXPLXPGXXRXXPXSXAXPXLPXXPKLXXSX--PXPXSPPXXSXPPXXPXPXXP 771
PP P P P + P P P + P PP PP P P P
Sbjct: 112 PPGPPGPPGRDGRPGAPGRPGNPGPPGRDGALLPGPPPKPPCQKCPPGPPGPAGP 166
>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical protein
F54D11.2 protein.
Length = 1145
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +3
Query: 567 PPXXPXXPXXLSXXXSPXSSXSGXRSXSPXLPRGPXXP 680
PP P P + +P S S +P PRGP P
Sbjct: 1102 PPPPPPLPILQNPVATPMSQQPPLPSPAPPPPRGPVDP 1139
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/53 (28%), Positives = 16/53 (30%)
Frame = +1
Query: 613 PPXPLXPGXXRXXPXSXAXPXLPXXPKLXXSXPXPXSPPXXSXPPXXPXPXXP 771
PP P P P P P+ P PP PP P P P
Sbjct: 28 PPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPP 80
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +1
Query: 709 PXPXSPPXXSXPPXXPXPXXPXISPXXXP 795
P P PP PP P P P P P
Sbjct: 29 PCPPPPPPMCAPPPLPCPPPPICPPQFCP 57
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/60 (30%), Positives = 21/60 (35%)
Frame = -3
Query: 794 GXXXGEXXGIXGXGXXGGXDXXGGDXGXGXXSXSLGXXGXXGXAXEXGXXRXXPGXRGXG 615
G G+ G G GG GG+ G + G G G G R PG G G
Sbjct: 98 GGGRGDWGGNNNGG--GGNWGGGGNNDGGWGGNNGGGGGGRGGGGRGGDGRGPPGSNGGG 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,464,453
Number of Sequences: 27780
Number of extensions: 122995
Number of successful extensions: 756
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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