Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_C17
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0045 - 10576475-10577198,10578347-10578504                       30   2.3  
12_02_0502 - 19746100-19746185,19746745-19750474                       29   5.3  
06_02_0333 + 14567509-14568081,14568109-14568438,14568642-145695...    29   5.3  
05_03_0281 + 11560402-11560569,11561373-11561579,11562966-115631...    29   5.3  
03_02_1023 + 13265179-13265330,13265526-13265637,13265752-132660...    29   5.3  
12_02_0364 - 18020249-18020737,18021075-18021502,18021563-180216...    28   7.1  
09_02_0417 - 8915604-8916779,8916863-8917270                           28   7.1  

>01_02_0045 - 10576475-10577198,10578347-10578504
          Length = 293

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 151 RGGAATLVWRSPAKGS-PEGEDRRGEGPI*SLPIRGSGPPNGGG 279
           RGG  T VW   A GS   GE   G     +   RG+GP   GG
Sbjct: 148 RGGGGTRVWEGAALGSNSAGEWAAGSKSGSAAAARGAGPREQGG 191


>12_02_0502 - 19746100-19746185,19746745-19750474
          Length = 1271

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 506 RWTPRASPTT*LPCTLDRLMVWRYQGSYWNPRL 408
           RW P       LPCTL++L++ R+ G    PRL
Sbjct: 886 RWCPNLKKLPALPCTLEKLII-RHVGLAVLPRL 917


>06_02_0333 +
           14567509-14568081,14568109-14568438,14568642-14569550,
           14569598-14569777,14570416-14570698,14571339-14571832
          Length = 922

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = -1

Query: 319 PPHRWGAPLWGPISHPRW-VDHSPLWGVIISVPPR-DGLP 206
           P H  G   W   S  RW   H  LWG   + PPR  G+P
Sbjct: 802 PRHSIGVSTWASASEDRWHAPHDILWGE--NQPPRSSGVP 839


>05_03_0281 +
           11560402-11560569,11561373-11561579,11562966-11563174,
           11563261-11563309,11563611-11563673,11563799-11565472
          Length = 789

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +1

Query: 163 ATLVWRSPAKGSPEGEDRRGEGPI*SLPIRGSGPPNGGGK 282
           ATL    P   SPE  +R  +GP   LP+RG    NGGG+
Sbjct: 743 ATLDLSRPTM-SPERPERESQGPQVGLPMRGVW-KNGGGQ 780


>03_02_1023 +
           13265179-13265330,13265526-13265637,13265752-13266048,
           13266361-13266623,13267637-13267847,13268420-13268590,
           13268671-13268748,13269275-13269520,13269763-13271868,
           13272122-13273904,13274113-13274216,13274752-13275108,
           13275210-13275328,13276175-13276436,13276669-13276893,
           13277075-13277214,13278087-13278159,13278431-13278532,
           13278647-13279018,13279183-13279230,13279516-13279900,
           13280440-13280558
          Length = 2574

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 142 LQIRGGAATLVWRSPAKGSPEGEDRRGEGPI*SLPIRGSGPPNGGGKW 285
           LQ++     +V R PAK + + +    +    S P +G G P G GKW
Sbjct: 121 LQLQISDLDIVLRQPAKSAKKKKPPPRKSTSTS-PAKGKGKPKGQGKW 167


>12_02_0364 -
           18020249-18020737,18021075-18021502,18021563-18021649,
           18022059-18022192,18023051-18023053,18023129-18023187,
           18023429-18023887
          Length = 552

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 348 GTELSTLVISPHIVGVPPYGDPFPTPVGWTTPP 250
           G     +V  P +V +PP      TP G  TPP
Sbjct: 7   GAGAGVVVSEPEVVSIPPTPRGMSTPDGTATPP 39


>09_02_0417 - 8915604-8916779,8916863-8917270
          Length = 527

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 315 HIVGVPPYGDPFPTPVGWTTPPYGE*LYRSLPATVFPF 202
           H+   PPY   FP P     PPY + L  ++P    P+
Sbjct: 36  HLFSQPPYAMNFPFPPFPHYPPYTQNLQYAVPPQYAPY 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,731,554
Number of Sequences: 37544
Number of extensions: 479939
Number of successful extensions: 1461
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)