Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_C17
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   4.1  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   5.4  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   5.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   7.1  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   7.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 377 MGV-LIMSAPMGLSCPHSSFPPTSLGCPLMGTHF 279
           +GV +++S  + L+    + P TS   PL+GT+F
Sbjct: 265 LGVTILLSLTVFLNMVAETMPATSDAVPLLGTYF 298


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 320 PPTSLGCPLMGTH 282
           PPTSL  PL+G +
Sbjct: 303 PPTSLAIPLLGKY 315


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 211 DRRGEGPI*SLPIRGSGPPN 270
           D + EG +  LP+RG+G  N
Sbjct: 130 DYKIEGKVLLLPVRGAGKSN 149


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 338 CPHSSFPPTSLGCPLMGTH 282
           CP + F P+ LG    G H
Sbjct: 32  CPEALFQPSFLGMEACGIH 50


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 320 PPTSLGCPLMGTH 282
           PPTSL  PL+G +
Sbjct: 290 PPTSLTVPLLGKY 302


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 470 GAKLWEMLVGSTVSPLVKIT 529
           G  +    VGS+VSP+V++T
Sbjct: 25  GVGIMTRKVGSSVSPVVELT 44


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 320 PPTSLGCPLMGTH 282
           PPTSL  PL+G +
Sbjct: 298 PPTSLVVPLLGKY 310


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 320 PPTSLGCPLMGTH 282
           PPTSL  PL+G +
Sbjct: 298 PPTSLVVPLLGKY 310


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 289 PIRGHPNDVGGNDECGQ 339
           P R HP+++ G + C Q
Sbjct: 108 PYRPHPHNLVGKEACKQ 124


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 289 PIRGHPNDVGGNDECGQ 339
           P R HP+++ G + C Q
Sbjct: 108 PYRPHPHNLVGKEACKQ 124


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 240 TPHKGEWSTQRGWEMGPHKGAP 305
           +PH+   + QRG    P +G P
Sbjct: 26  SPHQSPQAPQRGSPPNPSQGPP 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,545
Number of Sequences: 438
Number of extensions: 4482
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)